
PFRMAT AL
TARGET T0116
AUTHOR 4216-9015-4014
REMARK Predictor remarks
METHOD CASP4 submission
METHOD 
METHOD Work by Kelley LA, MacCallum RM & Sternberg MJE
METHOD Biomolecular Modelling Laboratory
METHOD Imperial Cancer Research Fund
METHOD 44 Lincoln's Inn Fields
METHOD London WC2A 3PX, England 
METHOD Tel +44-(0)20-7269-3565 / 3242
METHOD FAX +44-(0)20-7269-3534
METHOD
METHOD Using the results from the 3D-PSSM server:
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD 
METHOD and the information from the authors regarding an ABC
METHOD transporter domain at the C-terminus, we ran 3D-PSSM on the 
METHOD c-terminal 3rd of the target. 
METHOD The top several ranks were P-loops, with the ABC transporter 
METHOD 1b0u rank 2. This alignment was adjusted to enable the deletion 
METHOD of large excursions in the template.

MODEL 1
PARENT NONE 1 542
TER
PARENT 1b0u_A
V  543 N 5
R  544 K 6
P  545 L 7
R  546 H 8
F  547 V 9
G  548 I 10
D  549 D 11
L  551 L 12
Q  552 H 13
I  553 K 14
R  554 R 15
A  555 Y 16
G  556 G 17
R  557 G 18
H  558 H 19
P  559 E 20
V  560 V 21
V  561 L 22
E  562 K 23
F  567 G 24
V  568 V 25
P  569 S 26
N  570 L 27
D  571 Q 28
L  572 A 29
E  573 R 30
A  575 A 31
H  576 G 32
E  577 D 33
L  578 V 34
V  579 I 35
L  580 S 36
I  581 I 37
T  582 I 38
G  583 G 39
P  584 S 40
N  585 S 41
M  586 G 42
A  587 S 43
G  588 G 44
K  589 K 45
S  590 S 46
T  591 T 47
F  592 F 48
L  593 L 49
R  594 R 50
Q  595 C 51
T  596 I 52
A  597 N 53
L  598 F 54
I  599 L 55
A  600 E 56
L  601 K 57
L  602 P 58
A  603 S 59
Q  604 E 60
V  605 D 84
G  606 K 85
S  607 N 86
F  608 Q 87
V  609 L 88
P  610 R 89
A  611 L 90
E  612 L 91
E  613 R 92
A  614 T 93
H  615 R 94
L  616 L 95
P  617 T 96
L  618 M 97
F  619 V 98
D  620 F 99
G  621 Q 100
I  622 H 101
Y  623 F 102
T  624 N 103
R  625 L 104
I  626 W 105
G  627 S 106
A  628 H 107
S  629 M 108
D  630 T 109
D  631 V 110
L  632 L 111
A  633 E 112
G  634 N 113
G  635 V 114
K  636 M 115
S  637 E 116
T  638 L 154
F  639 S 155
M  640 G 156
V  641 G 157
E  642 Q 158
M  643 Q 159
E  644 Q 160
E  645 R 161
V  646 V 162
A  647 S 163
L  648 I 164
I  649 A 165
L  650 R 166
K  651 A 167
E  652 L 168
A  653 A 169
T  654 M 170
E  655 E 171
N  656 P 172
S  657 D 173
L  658 V 174
V  659 L 175
L  660 L 176
L  661 F 177
D  662 D 178
E  663 E 179
V  664 P 180
G  665 T 181
R  666 S 182
G  667 A 183
T  668 L 184
S  669 D 185
S  670 P 186
L  671 E 187
D  672 L 188
G  673 V 189
V  674 G 190
A  675 E 191
I  676 V 192
A  677 L 193
T  678 R 194
A  679 I 195
V  680 M 196
A  681 Q 197
E  682 Q 198
A  683 L 199
L  684 A 200
H  685 E 201
E  686 E 202
R  687 G 203
R  688 K 204
A  689 T 205
T  691 M 206
L  692 V 207
F  693 V 208
A  694 V 209
T  695 T 210
H  696 H 211
Y  697 E 212
F  698 M 213
E  699 G 214
L  700 F 215
T  701 A 216
A  702 R 217
L  703 H 218
G  704 V 219
N  710 S 220
L  711 S 221
H  712 H 222
V  713 V 223
A  714 I 224
A  715 F 225
R  716 L 226
E  717 H 227
E  718 Q 228
A  719 G 229
L  722 K 230
V  723 I 231
F  724 E 232
Y  725 E 233
H  726 E 234
Q  727 G 235
V  728 D 236
L  729 P 237
P  730 E 238
G  731 Q 239
P  732 V 240
A  733 F 241
S  734 G 242
K  735 N 243
S  736 P 244
Y  737 Q 245
G  738 S 246
V  739 P 247
E  740 R 248
V  741 L 249
A  742 Q 250
A  743 Q 251
M  744 F 252
A  745 L 253
G  746 K 254
L  747 G 255
P  748 S 256
K  749 L 257
E  750 K 258
V  751 K 259
V  752 L 260
A  753 E 261
R  754 H 262
TER
END


