
PFRMAT AL
TARGET T0116
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  5
PARENT 1ft1_A
R 285    R 172
R 286    R 173
L 287    V 174
L 288    L 175
Q 289    V 176
S 290    E 177
W 291    W 178
L 292    L 179
R 293    K 180
H 294    D 181
P 295    P 182
L 296    S 183
L 297    Q 184
D 298    E 185
R 299    L 186
G 300    E 187
P 301    F 188
L 302    I 189
E 303    Q 204
A 304    H 205
R 305    R 206
L 306    Q 207
D 307    W 208
R 308    V 209
V 309    I 210
E 310    Q 211
G 311    E 212
F 312    F 213
V 313    R 214
R 314    L 215
E 315    W 216
G 316    D 217
A 317    N 218
L 318    E 219
R 319    L 220
E 320    Q 221
G 321    Y 222
V 322    V 223
R 323    D 224
R 324    Q 225
L 325    L 226
L 326    L 227
Y 327    K 228
R 328    E 229
D 331    D 230
L 332    V 231
R 334    R 232
L 335    N 233
A 336    N 234
T 337    S 235
R 338    V 236
L 339    W 237
E 340    N 238
L 341    S 245
G 342    N 246
R 343    T 247
A 344    T 248
S 345    G 249
P 346    Y 250
K 347    S 251
D 348    D 252
L 349    R 253
G 350    A 254
A 351    V 255
L 352    L 256
R 353    E 257
R 354    R 258
S 355    E 259
L 356    V 260
Q 357    Q 261
I 358    Y 262
L 359    T 263
P 360    L 264
E 361    E 265
L 362    M 266
R 363    I 267
A 364    K 268
L 365    L 269
L 366    V 270
G 367    P 271
E 368    H 272
E 369    N 273
TER
END

