
PFRMAT AL
TARGET T0116
AUTHOR 7573-5202-7463
METHOD 
METHOD The target profile was searched against database of profiles built
METHOD from 35% NR subset of PDB. Each profile was generated by running 5
METHOD iterations of PSI-BLAST and dumping the scoring matrix.  The significance
METHOD of each alignment was evaluated by randomly shuffling the template
METHOD profile.  Top-scoring hits (Z-score > 4.0) were checked for compatability
METHOD with the PHD and PSIPRED secondary structure preditions and with the 
METHOD published secondary structure as cited on the CASP target page.  
METHOD
MODEL 3
PARENT 1bknA
L 252    V  20 
P 253    E  21 
E 254    R  22 
A 255    P  23 
T 256    A  24 
L 257    S  25 
R 258    V  26 
A 259    V  27 
L 260    K  28 
E 261    E  29 
V 262    L  30 
F 263    V  31 
E 264    E  32 
P 265    N  33 
L 266    S  34 
Q 269    L  35 
D 270    D  36 
T 271    A  37 
L 272    G  38 
F 273    A  39 
S 274    T  40 
V 275    R  41 
L 276    I  42 
D 277    D  43 
E 278    I  44 
T 279    D  45 
R 280    I  46 
T 281    E  47 
A 282    R  48 
P 283    G  49 
G 284    G  50 
R 285    A  51 
R 286    K  52 
L 287    L  53 
L 288    I  54 
Q 289    R  55 
L 292    I  56 
R 293    R  57 
H 294    D  58 
P 295    N  59 
L 296    G  60 
L 297    C  61 
D 298    G  62 
R 299    I  63 
G 300    K  64 
P 301    K  65 
L 302    D  66 
E 303    E  67 
A 304    L  68 
R 305    A  69 
L 306    L  70 
D 307    A  71 
R 308    L  72 
V 309    A  73 
G 316    I  80 
A 317    A  81 
L 318    S  82 
R 319    L  83 
E 320    D  84 
G 321    D  85 
V 322    L  86 
R 323    E  87 
R 324    A  88 
L 325    I  89 
L 326    I  90 
Y 327    S  91 
R 328    L  92 
L 329    G  93 
A 330    F  94 
D 331    R  95 
L 332    G  96 
E 333    E  97 
I 358    A  98 
L 359    L  99 
P 360    A 100 
E 361    S 101 
L 362    I 102 
R 363    S 103 
A 364    S 104 
L 365    V 105 
L 366    S 106 
E 369    R 107 
V 370    L 108 
G 371    T 109 
L 372    L 110 
P 373    T 111 
D 374    S 112 
L 375    R 113 
S 376    T 114 
P 377    A 115 
L 378    E 116 
K 379    Q 117 
E 380    Q 118 
E 381    E 119 
L 382    A 120 
E 383    W 121 
A 384    Q 122 
A 385    A 123 
L 386    Y 124 
V 387    A 125 
V 394    V 132 
S 395    T 133 
I 400    V 134 
R 401    K 135 
E 402    P 136 
G 403    A 137 
Y 404    A 138 
D 405    H 139 
P 406    P 140 
D 407    V 141 
L 408    G 142 
D 409    T 143 
A 410    T 144 
L 411    L 145 
E 417    E 146 
G 418    V 147 
V 419    L 148 
A 420    D 149 
T 437    T 163 
L 438    E 164 
K 439    K 165 
V 440    T 166 
G 441    E 167 
Y 442    F 168 
N 443    N 169 
A 444    H 170 
V 445    I 171 
F 446    D 172 
G 447    E 173 
Y 448    I 174 
Y 449    I 175 
L 450    R 176 
E 451    R 177 
V 452    I 178 
T 453    A 179 
R 454    L 180 
P 455    A 181 
Y 456    R 182 
Y 457    F 183 
E 458    D 184 
V 460    V 185 
P 461    T 186 
K 462    I 187 
E 463    N 188 
Y 464    L 189 
R 465    S 190 
P 466    H 191 
V 467    N 192 
Q 468    G 193 
T 469    K 194 
L 470    I 195 
K 471    V 196 
R 473    R 197 
Q 474    Q 198 
R 475    Y 199 
Y 476    R 200 
T 477    A 201 
L 478    V 202 
P 479    P 203 
E 480    E 204 
M 481    G 205 
K 482    G 206 
E 483    Q 207 
K 484    K 208 
E 485    E 209 
R 486    R 210 
R 490    R 211 
L 491    L 212 
E 492    G 213 
A 493    A 214 
L 494    I 215 
I 495    C 216 
R 496    G 217 
E 501    T 218 
V 502    A 219 
F 503    F 220 
L 504    L 221 
E 505    E 222 
V 506    Q 223 
R 507    A 224 
E 508    L 225 
R 509    A 226 
A 510    I 227 
K 511    E 228 
R 512    W 229 
Q 513    Q 230 
A 514    H 231 
E 515    G 232 
A 516    D 233 
L 517    L 234 
R 518    T 235 
E 519    L 236 
A 520    R 237 
A 521    G 238 
R 522    W 239 
I 523    V 240 
L 524    A 241 
A 525    D 242 
E 526    P 243 
L 527    N 244 
D 528    H 245 
V 529    T 246 
Y 530    T 247 
A 531    P 248 
A 532    A 249 
L 533    L 250 
A 534    A 251 
E 535    E 252 
V 536    I 253 
A 537    Q 254 
V 538    Y 255 
R 539    C 256 
Y 540    Y 257 
R 546    V 258 
F 547    N 259 
G 548    G 260 
D 549    R 261 
R 550    M 262 
L 551    M 263 
Q 552    R 264 
I 553    D 265 
R 554    R 266 
A 555    L 267 
G 556    I 268 
R 557    N 269 
H 558    H 270 
P 559    A 271 
V 560    I 272 
V 561    R 273 
E 562    Q 274 
R 563    A 275 
R 564    C 276 
T 565    E 277 
E 566    D 278 
F 567    K 279 
V 568    L 280 
P 569    G 281 
N 570    A 282 
D 571    D 283 
L 572    Q 284 
E 573    Q 285 
M 574    P 286 
A 575    A 287 
H 576    F 288 
E 577    V 289 
L 578    L 290 
V 579    Y 291 
L 580    L 292 
I 581    E 293 
T 582    I 294 
G 583    D 295 
P 584    P 296 
F 592    H 297 
L 593    Q 298 
R 594    V 299 
A 611    S 315 
E 612    R 316 
E 613    L 317 
A 614    V 318 
H 615    H 319 
L 616    D 320 
P 617    F 321 
L 618    I 322 
F 619    Y 323 
D 620    Q 324 
G 621    G 325 
I 622    V 326 
Y 623    L 327 
T 624    S 328 
R 625    V 329 
I 626    L 330 
G 627    Q 331 
TER    
END      


