
PFRMAT AL
TARGET T0118
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 2
PARENT 1hdm_A
L   58 L 13
P   59 Q 14
N   60 N 15
G   61 H 16
I   62 T 17
F   63 F 18
V   64 L 19
E   65 H 20
T   66 T 21
L   69 V 22
W   70 Y 23
S   72 C 24
D   73 Q 25
D   74 D 26
R   75 G 27
K   76 S 28
K   77 P 29
H   78 S 30
L   79 V 31
L   80 G 32
I   81 L 33
R   82 S 34
E   83 E 35
Q   84 A 36
H   85 Y 37
P   86 D 38
E   87 E 39
D   89 D 40
I   90 Q 41
R   91 L 42
I   92 F 43
V   93 F 44
F   94 F 45
S   95 D 46
S   96 F 47
S   97 S 48
R   98 Q 49
T   99 N 50
K  100 T 51
L  101 R 52
Y  102 V 53
K  103 P 54
G  104 R 55
S  105 L 56
P  106 P 57
S  108 E 58
Y  109 F 59
G  110 A 60
E  111 D 61
F  112 W 62
C  113 A 63
E  114 Q 64
K  115 E 65
H  116 Q 66
G  117 G 67
I  118 I 70
K  119 L 71
F  120 F 72
D  122 D 73
K  123 K 74
L  124 E 75
I  125 F 76
A  127 C 77
E  128 E 78
W  129 W 79
I  130 I 81
K  131 Q 82
E  132 Q 83
P  133 P 85
K  134 K 86
K  135 L 87
E  136 D 88
V  137 I 91
P  138 P 92
F  139 V 93
TER
END

