
PFRMAT AL
TARGET T0118
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 1dvd
M    1 M 6
A    2 I 7
G    3 P 8
Y    4 G 9
G    5 G 10
A    6 L 11
K    7 S 12
G    8 E 13
I    9 A 14
R   10 K 15
K   11 P 16
V   12 A 17
G   13 T 18
A   14 P 19
F   15 E 20
R   16 I 21
S   17 Q 22
G   18 E 23
L   19 I 24
E   20 V 25
D   21 D 26
K   22 K 27
V   23 V 28
S   24 K 29
K   25 P 30
Q   26 Q 31
L   27 L 32
E   28 E 33
S   29 E 34
K   30 K 35
G   31 T 36
I   32 N 37
K   33 E 38
E   35 T 39
Y   36 Y 40
E   37 G 43
E   38 K 44
W   39 L 45
K   40 E 46
V   41 V 48
P   42 Q 49
Y   43 Y 50
V   44 K 51
I   45 T 52
P   46 Q 53
A   47 V 54
S   48 V 55
N   49 A 56
H   50 G 57
T   51 T 58
G   61 N 59
I   62 Y 60
F   63 Y 61
V   64 I 62
E   65 K 63
T   66 V 64
K   67 R 65
E   71 A 66
S   72 G 67
D   73 D 68
D   74 N 92
R   75 K 93
K   76 Y 94
K   77 M 95
H   78 H 96
L   79 L 97
L   80 K 98
I   81 V 99
R   82 F 100
E   83 K 101
Q   84 S 102
H   85 L 102A
P   86 P 103
E   87 G 104
L   88 Q 105
D   89 N 105A
I   90 E 106
R   91 D 107
I   92 L 108
V   93 V 109
F   94 L 110
S   95 T 111
S   96 G 112
S   97 Y 113
R   98 Q 114
T   99 V 115
K  100 D 115A
L  101 K 116
Y  102 N 117
K  103 K 118
G  104 D 119
S  105 D 120
P  106 E 121
T  107 L 122
S  108 T 123
Y  109 G 124
G  110 F 125
TER
END

