
PFRMAT AL
TARGET T0118
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  1
PARENT 1snq
L 101    M  26
Y 102    Y  27
K 103    K  28
G 104    G  29
S 105    Q  30
P 106    P  31
T 107    M  32
S 108    T  33
Y 109    F  34
G 110    R  35
E 111    L  36
F 112    L  37
C 113    L  38
E 114    T  44
A 121    V  51
D 122    E  52
K 123    K  53
L 124    Y  54
I 125    G  55
P 126    P  56
A 127    K  63
E 128    K  64
W 129    M  65
I 130    V  66
K 131    E  67
E 132    N  68
P 133    A  69
K 134    K  70
K 135    K  71
E 136    E  73
V 137    V  74
P 138    E  75
F 139    F  76
D 140    D  77
R 141    K  78
L 142    G  79
K 143    Q  80
R 144    R  81
K 145    T  82
TER
END


