
PFRMAT AL
TARGET T0118
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 1ab2
F  56    Y  23
L  57    L  24
L  58    L  25
P  59    S  26
N  60    S  27
G  61    G  28
I  62    I  29
F  63    F  33
V  64    L  34
E  65    V  35
T  66    R  36
K  67    E  37
G  68    S  38
E  71    E  39
S  72    S  40
D  73    S  41
D  74    P  42
R  75    G  43
K  76    Q  44
K  77    R  45
H  78    S  46
L  79    I  47
L  80    S  48
I  81    L  49
R  82    R  50
E  83    Y  51
Q  84    E  52
H  85    G  53
P  86    R  54
E  87    V  55
L  88    Y  56
D  89    H  57
I  90    Y  58
R  91    R  59
I  92    I  60
V  93    N  61
S  95    T  62
S  96    A  63
S  97    S  64
R  98    D  65
T  99    G  66
K 100    K  67
L 101    L  68
Y 102    Y  69
K 103    V  70
G 104    S  71
S 105    S  72
P 106    E  73
T 107    S  74
S 108    R  75
Y 109    F  76
G 110    N  77
E 111    T  78
F 112    L  79
C 113    A  80
E 114    E  81
K 115    H  84
H 116    H  85
G 117    H  86
I 118    S  87
K 119    T  88
F 120    V  89
A 121    A  90
D 122    D  91
K 123    G  92
L 124    L  93
I 125    I  94
P 126    T  95
TER
END


