
PFRMAT SS
TARGET T0118
AUTHOR 9521-1365-5893
METHOD Program Name: PSIPRED
METHOD Synopsis: Neural network prediction based on PSIBLAST output
METHOD Five neural networks are used to predict secondary structure directly
METHOD from the profiles generated by PSIBLAST. Networks 1-4 predict
METHOD secondary structure, the 5th network filters the output of the first
METHOD level networks. The first level networks have 17*21 inputs and 75 hidden
METHOD units, the second level network has 17*3 inputs and 55 hidden units.
METHOD The networks have been trained on a set of 2937 proteins with
METHOD early-stopped training. 10% of the training data was used to detect
METHOD convergence.
METHOD The target sequence was scanned against a non-redundant databank of
METHOD filtered protein sequences (> 500,000 sequences), with 3 PSIBLAST
METHOD iterations.
MODEL  1
M C 0.98
A C 0.74
G C 0.44
Y C 0.25
G C 0.16
A C 0.11
K C 0.08
G C 0.05
I H 0.11
R H 0.06
K H 0.03
V H 0.05
G H 0.11
A H 0.17
F H 0.15
R H 0.14
S C 0.01
G C 0.05
L C 0.09
E H 0.19
D H 0.45
K H 0.60
V H 0.66
S H 0.66
K H 0.66
Q H 0.66
L H 0.57
E H 0.36
S H 0.16
K C 0.22
G C 0.34
I C 0.47
K E 0.05
F E 0.09
E E 0.07
Y E 0.07
E E 0.05
E E 0.03
W C 0.04
K C 0.17
V C 0.22
P C 0.28
Y E 0.55
V E 0.47
I E 0.39
P C 0.01
A C 0.38
S C 0.59
N C 0.62
H C 0.37
T C 0.26
Y C 0.44
T C 0.41
P C 0.28
D C 0.16
F C 0.11
L C 0.29
L C 0.43
P C 0.55
N C 0.32
G C 0.09
I E 0.20
F E 0.53
V E 0.62
E E 0.39
T E 0.16
K C 0.14
G C 0.23
L C 0.19
W C 0.25
E C 0.37
S C 0.32
D C 0.43
D C 0.34
R C 0.23
K C 0.11
K E 0.12
H E 0.16
L E 0.23
L E 0.30
I E 0.29
R E 0.28
E C 0.14
Q C 0.49
H C 0.69
P C 0.75
E C 0.47
L C 0.28
D C 0.09
I E 0.80
R E 0.87
I E 0.90
V E 0.83
F E 0.53
S E 0.22
S C 0.28
S C 0.29
R C 0.22
T C 0.14
K E 0.08
L E 0.12
Y C 0.09
K C 0.38
G C 0.63
S C 0.74
P C 0.71
T C 0.42
S C 0.35
Y C 0.28
G H 0.38
E H 0.55
F H 0.73
C H 0.76
E H 0.69
K H 0.62
H C 0.13
G C 0.16
I C 0.09
K C 0.05
F C 0.01
A H 0.08
D H 0.09
K H 0.09
L C 0.04
I C 0.28
P C 0.53
A H 0.19
E H 0.24
W H 0.28
I C 0.08
K C 0.39
E C 0.42
P C 0.30
K C 0.20
K C 0.10
E C 0.41
V C 0.61
P C 0.81
F H 0.16
D H 0.26
R H 0.26
L H 0.14
K H 0.03
R C 0.05
K C 0.39
G C 0.65
G C 0.77
K C 0.87
K C 0.97
END

