
PFRMAT AL
TARGET T0120
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  1
PARENT 1quu_A
I 127    I  99
C 128    C 100
Y 129    D 101
C 130    Q 102
L 131    W 103
D 132    D 104
T 133    R 105
I 134    L 106
A 135    G 107
E 136    T 108
N 137    T 110
Q 138    Q 111
A 139    K 112
K 140    R 113
N 141    R 114
E 142    E 115
H 143    A 116
L 144    L 117
Q 145    E 118
K 146    R 119
E 147    M 120
E 149    E 121
R 150    K 122
L 151    L 123
L 152    L 124
R 153    E 125
D 154    T 126
W 155    I 127
N 156    D 128
D 157    Q 129
V 158    L 130
Q 159    H 131
G 160    L 132
R 161    E 133
F 162    F 134
E 163    A 135
K 164    K 136
C 165    R 137
V 166    A 138
S 167    A 139
A 168    P 140
K 169    M 145
E 170    E 146
A 171    G 147
L 172    A 148
E 173    M 149
T 174    E 150
D 175    D 151
L 176    L 152
Y 177    Q 153
K 178    D 154
R 179    M 155
F 180    F 156
I 181    I 157
L 182    V 158
V 183    H 159
L 184    S 160
N 185    I 161
E 186    E 162
K 187    E 163
K 188    I 164
T 189    Q 165
K 190    S 166
I 191    L 167
R 192    I 168
S 193    T 169
L 194    A 170
H 195    H 171
N 196    E 172
K 197    Q 173
L 198    F 174
A 201    K 175
A 202    A 176
Q 203    T 177
E 204    L 178
R 205    P 179
E 206    E 180
K 207    A 181
D 208    D 182
I 209    G 183
K 210    E 184
Q 211    R 185
TER
END


