
PFRMAT AL
TARGET T0120
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 1wdc_C
N 100    D  10
L 101    L  11
K 102    K  12
D 103    D  13
V 104    V  14
F 106    F  15
R 107    E  16
L 108    L  17
F 111    F  18
N 112    D  19
L 113    F  20
E 114    W  21
K 115    D  22
V 116    G  23
E 117    R  24
N 118    D  25
P 119    G  26
A 120    A  27
E 121    V  28
V 122    D  29
I 123    A  30
R 124    F  31
E 125    K  32
L 126    L  33
I 127    V  36
C 128    C  37
Y 129    R  38
C 130    C  39
L 131    L  40
D 132    G  41
T 133    I  42
I 134    N  43
A 135    P  44
E 136    R  45
N 137    N  46
Q 138    E  47
A 139    D  48
TER
END


