
PFRMAT AL
TARGET T0120
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  3
PARENT 1gph_1
P  14    P  13
S  15    Q  14
I  16    I  15
T  17    T  16
H  18    Y  17
F  19    Y  18
L  20    G  19
Q  21    L  20
V  22    H  21
S  23    S  22
W  24    L  23
E  25    Q  24
K  26    H  25
T  27    R  26
L  28    G  27
E  29    Q  28
S  30    E  29
G  31    G  30
F  32    A  31
V  33    G  32
I  34    I  33
T  35    V  34
L  36    A  35
T  37    T  36
D  38    D  37
G  39    G  38
H  40    E  39
S  41    T  42
A  42    A  43
W  43    H  44
T  44    K  45
G  45    G  46
T  46    Q  47
V  47    G  48
S  48    L  49
E  49    I  50
S  50    T  51
E  51    E  52
I  52    V  53
S  53    F  54
Q  54    Q  55
E  55    N  56
A  56    G  57
D  57    E  58
M  59    L  59
A  60    S  60
M  61    K  61
E  62    V  62
K  63    K  63
G  64    G  64
K  65    K  65
Y  66    A  67
V  67    I  68
G  68    G  69
E  69    H  70
L  70    V  71
R  71    R  72
K  72    Y  73
A  73    A  74
L  74    T  75
L  75    A  76
S  76    G  77
G  77    G  78
A  78    G  79
G  79    G  80
P  80    Y  81
A  81    E  82
D  82    N  83
V  83    V  84
Y  84    Q  85
T  85    P  86
F  86    L  87
N  87    L  88
F  88    F  89
S  89    R  90
K  90    S  91
E  91    Q  92
S  92    N  93
TER
END


