
PFRMAT AL
TARGET T0120
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  4
PARENT 1cii
R 150    R 135
L 151    L 136
L 152    L 137
R 153    Q 138
D 154    A 139
W 155    E 140
N 156    L 141
D 157    R 142
V 158    E 143
Q 159    Y 144
G 160    G 145
F 162    F 146
E 163    R 147
K 164    T 148
C 165    E 149
V 166    I 150
S 167    A 151
A 168    G 152
K 169    Y 153
E 170    D 154
A 171    A 155
L 172    L 156
E 173    R 157
T 174    L 158
D 175    H 159
L 176    T 160
Y 177    E 161
K 178    S 162
R 179    R 163
I 181    M 164
L 182    L 165
V 183    F 166
L 184    A 167
N 185    D 168
E 186    A 169
K 187    D 170
K 188    S 171
T 189    L 172
K 190    R 173
I 191    I 174
R 192    S 175
S 193    P 176
L 194    R 177
H 195    E 178
N 196    A 179
K 197    R 180
L 198    L 182
L 199    I 183
N 200    E 184
A 201    Q 185
A 202    A 186
Q 203    E 187
E 204    K 188
R 205    R 189
E 206    Q 190
K 207    K 191
D 208    D 192
I 209    A 193
K 210    Q 194
Q 211    N 195
E 212    A 196
G 213    D 197
E 214    K 198
T 215    K 199
A 216    A 200
D 224    R 209
R 225    R 210
D 226    K 211
P 227    G 212
V 228    I 213
Y 229    L 214
D 230    D 215
E 231    T 216
S 232    R 217
T 233    L 218
D 234    S 219
E 235    E 220
E 236    L 221
S 237    E 222
E 238    K 223
N 239    N 224
S 244    G 225
G 245    G 226
L 246    A 227
A 247    A 228
S 248    L 229
A 249    A 230
A 250    V 231
V 251    L 232
S 252    A 234
K 253    Q 235
D 254    Q 236
D 255    A 237
S 256    R 238
I 257    L 239
I 258    L 240
S 259    G 241
S 260    Q 242
L 261    Q 243
D 262    T 244
V 263    R 245
T 264    N 246
D 265    D 247
I 266    I 250
A 267    S 251
P 268    E 252
S 269    A 253
R 270    R 254
K 271    N 255
R 272    K 256
R 273    L 257
Q 274    S 258
R 275    S 259
M 276    V 260
Q 277    T 261
R 278    E 262
N 279    S 263
L 280    L 264
G 281    N 265
T 282    T 266
E 283    R 268
P 284    N 269
K 285    A 270
M 286    L 271
A 287    T 272
P 288    R 273
Q 289    A 274
E 290    E 275
N 291    Q 276
Q 292    Q 277
L 293    L 278
Q 294    T 279
E 295    Q 280
K 296    Q 281
E 297    K 282
N 298    N 283
S 299    T 284
P 301    P 285
D 302    D 286
S 303    G 287
S 304    K 288
TER
END


