
PFRMAT AL
TARGET T0120
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=3.00 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd2tmda3
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  2
PARENT 2tmd_A
M   1     D   341
E   2     I   342
R   3     R   343
K   4     V   344
I   5     C   345
S   6     I   346
R   7     G   347
T  17     C   348
H  18     N   349
F  19     V   350
L  20     C   351
Q  21     I   352
V  22     S   353
S  23     R   354
W  24     W   355
E  25     E   356
K  26     I   357
G  39     G   358
H  40     G   359
S  41     P   360
A  42     P   361
W  43     M   362
T  44     I   363
G  45     C   364
T  46     T   365
V  47     Q   366
S  48     N   367
E  49     A   368
S  50     T   369
E  51     A   370
I  52     G   371
S  53     E   372
Q  54     E   373
E  55     Y   374
A  56     R   375
D  57     R   376
D  58     G   377
M  59     W   378
A  60     H   379
M  61     P   380
E  62     E   381
K  63     K   382
G  64     F   383
K  65     R   384
Y  66     Q   385
V  67     T   386
G  68     K   387
E  69     N   388
L  70     K   389
R  71     D   390
K  72     S   391
A  73     V   392
L  74     L   393
L  75     I   394
S  76     V   395
G  77     G   396
A  78     A   397
G  79     G   398
P  80     P   399
A  81     S   400
D  82     G   401
V  83     S   402
Y  84     E   403
T  85     A   404
F  86     A   405
N  87     R   406
F  88     V   407
S  89     L   408
K  90     M   409
E  91     E   410
S  92     S   411
C  93     G   412
Y  94     Y   413
E  98     T   414
K  99     V   415
N 100     H   416
L 101     L   417
K 102     T   418
D 103     D   419
V 104     T   420
S 105     A   421
F 106     E   422
R 107     K   423
L 108     I   424
G 109     G   425
S 110     G   426
N 112     H   427
L 113     L   428
E 114     N   429
K 115     Q   430
V 116     V   431
E 117     A   432
N 118     A   433
L 131     L   434
D 132     P   435
T 133     G   436
I 134     L   437
A 135     G   438
E 136     E   439
N 137     W   440
Q 138     S   441
A 139     Y   442
K 140     H   443
N 141     R   444
E 142     D   445
H 143     Y   446
L 144     R   447
Q 145     E   448
K 146     T   449
E 147     Q   450
N 148     I   451
E 149     T   452
R 150     K   453
L 151     L   454
L 152     L   455
R 153     K   456
D 154     K   457
W 155     N   458
N 156     K   459
D 157     E   460
V 158     S   461
Q 159     Q   462
G 160     L   463
R 161     A   464
F 162     L   465
E 163     Q   467
K 164     K   468
C 165     P   469
V 166     M   470
S 167     T   471
A 168     A   472
K 169     D   473
E 170     D   474
A 171     V   475
L 172     L   476
E 173     Q   477
T 174     Y   478
D 175     G   479
Y 177     A   480
K 178     D   481
R 179     K   482
F 180     V   483
I 181     I   484
L 182     I   485
V 183     A   486
L 184     T   487
N 185     G   488
E 186     A   489
K 187     S   646
K 188     E   647
T 189     C   648
K 197     T   649
L 198     L   650
L 199     W   651
N 200     N   652
A 201     E   653
A 202     L   654
Q 203     K   655
E 204     A   656
R 205     R   657
E 206     E   658
K 207     S   659
D 208     E   660
I 209     W   661
K 210     A   662
Q 211     E   663
E 212     N   664
G 213     D   665
E 214     I   666
T 215     K   667
A 216     G   668
I 217     I   669
C 218     Y   670
S 219     L   671
E 220     I   672
M 221     G   673
T 222     D   674
A 223     A   675
D 224     E   676
R 225     A   677
D 226     P   678
P 227     R   679
V 228     L   680
I 266     I   681
A 267     A   682
P 268     D   683
S 269     A   684
R 270     T   685
K 271     F   686
R 272     T   687
R 273     G   688
Q 274     H   689
R 275     R   690
M 276     V   691
Q 277     A   692
R 278     R   693
E 295     E   694
K 296     I   695
E 297     E   696
N 298     E   697
S 299     A   698
R 300     N   699
P 301     P   700
D 302     Q   701
S 303     I   702
S 304     A   703
L 305     I   704
P 306     P   705
E 307     Y   706
T 308     K   707
S 309     R   708
K 310     E   709
K 311     T   710
E 312     I   711
H 313     A   712
I 314     W   713
S 315     G   714
A 316     T   715
E 317     P   716
N 318     H   717
M 319     M   718
S 320     P   719
L 321     G   720
E 322     G   721
T 323     N   722
L 324     F   723
R 325     K   724
N 326     I   725
S 327     E   726
S 328     Y   727
P 329     K   728
E 330     V   729
TER
END

