
PFRMAT AL
TARGET T0120
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  5
PARENT 1xo1_A
F  32    F 104
V  33    F 105
I  34    E 106
T  35    Y 107
L  36    L 108
T  37    K 109
D  38    D 110
G  39    A 111
H  40    F 112
S  41    E 113
A  42    L 114
W  43    C 115
T  44    K 116
G  45    T 117
T  46    T 118
V  47    F 119
S  48    P 120
E  49    T 121
S  50    F 122
E  51    T 123
I  52    I 124
S  53    R 125
Q  54    G 126
E  55    E 128
A  56    A 129
D  57    D 130
D  58    D 131
M  59    M 132
A  60    A 133
M  61    A 134
E  62    Y 135
K  63    I 136
G  64    V 137
K  65    K 138
Y  66    L 139
V  67    I 140
G  68    G 141
E  69    H 142
L  70    L 143
R  71    Y 144
K  72    D 145
A  73    H 146
L  74    V 147
L  75    W 148
S  76    L 149
G  77    I 150
A  78    S 151
G  79    T 152
P  80    D 153
A  81    G 154
D  82    D 155
V  83    W 156
Y  84    D 157
T  85    T 158
F  86    L 159
N  87    L 160
F  88    T 161
S  89    D 162
K  90    K 163
E  91    V 164
S  92    S 165
C  93    R 166
Y  94    F 167
F  95    S 168
F  96    F 169
F  97    T 170
E  98    T 171
K  99    R 172
N 100    R 173
L 101    E 174
K 102    Y 175
D 103    H 176
V 104    L 177
S 105    R 178
F 106    D 179
R 107    M 180
L 108    Y 181
G 109    E 182
S 110    H 183
F 111    H 184
N 112    N 185
L 113    V 186
E 114    D 187
K 115    D 188
V 116    V 189
E 117    E 190
TER
END


