
PFRMAT AL
TARGET T0121
AUTHOR 7574-7279-4773
REMARK CASP4 Prediction by Michael Bass on 9/12/2000
METHOD AmgenThread.  Gapped alignments with no end penalties.
METHOD Uses residue-based statistical potentials.  Specific
METHOD potentials include exposed surface area, inter-residue
METHOD distance-dependent contacts, and backbone dihedral
METHOD angle preferences.  The search database is against the
METHOD a set of PDB structures sharing 45% identity or
METHOD less level containing 2,205 structures.
METHOD This is an automatic prediction method.
REMARK Results from database search:
REMARK Sequence "t0121" has a significant match
REMARK pdb1b0u_A    16.968     0.313    88.630  MOLECULE: HISTIDINE PERMEASE;
REMARK                                          SCOP: A/B; P-loop containing nucleotide triphosphate hydrolases
REMARK pdb1dd5_A     4.183     0.093    16.498  MOLECULE: RIBOSOME RECYCLING FACTOR;
REMARK                                          SCOP: A+B; RRF/tRNA synthetase additional domain-like
REMARK pdb1or3_A     3.845     0.087     5.921  MOLECULE: APOLIPOPROTEIN E;
REMARK                                          SCOP: Alpha; Four-helical up-and-down bundle
REMARK pdb1af7       3.660     0.084    -1.441  MOLECULE: CHEMOTAXIS RECEPTOR METHYLTRANSFERASE CHER;
REMARK                                          SCOP: 11-91: Alpha; Chemotaxis receptor methyltransferase CheR, N-terminal domain
REMARK                                          SCOP: 92-284: A/B; S-adenosyl-L-methionine-dependent methyltransferases
REMARK pdb1b31_A     3.559     0.083    -9.806  MOLECULE: XYLANASE;
REMARK                                          SCOP: A/B; TIM beta/alpha-barrel
REMARK pdb1yrg_A     3.549     0.082   -24.767  MOLECULE: GTPASE-ACTIVATING PROTEIN RNA1_SCHPO;
REMARK
REMARK Results from database search:
REMARK Sequence "t0121c4" has a significant match (245-301)
REMARK pdb1b4f_A    12.536     0.418    21.359  MOLECULE: EPHB2;
REMARK                                          SCOP: Alpha; SAM domain-like
REMARK pdb1cc8_A     6.380     0.231     6.556  MOLECULE: METALLOCHAPERONE ATX1;
REMARK                                          SCOP: A+B; Ferredoxin-like
REMARK pdb1lea       5.499     0.204    11.818  LEXA REPRESSOR DNA BINDING DOMAIN
REMARK                                          SCOP: Alpha; DNA/RNA-binding 3-helical bundle
REMARK pdb1psr_A     5.174     0.194     2.333  MOLECULE: PSORIASIN;
REMARK                                          SCOP: Alpha; EF Hand-like
REMARK pdb1nkl       5.098     0.192     9.978  MOLECULE: NK-LYSIN;
REMARK                                          SCOP: Alpha; Saposin
REMARK
REMARK Results from database search:
REMARK Sequence "t0121c3" has a significant match (295-end)
REMARK pdb1opd       7.170     0.280     8.031  MOLECULE: HISTIDINE-CONTAINING PROTEIN;
REMARK                                          SCOP: A+B; Histidine-containing phosphocarrier proteins (HPr)
REMARK pdb1b34_B     6.780     0.267    13.037  MOLECULE: SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1;
REMARK                                          SCOP: Beta; Sm motif of small nuclear ribonucleoproteins,  SNRNP
REMARK pdb1cc8_A     6.080     0.244    10.625  MOLECULE: METALLOCHAPERONE ATX1;
REMARK                                          SCOP: A+B; Ferredoxin-like
REMARK pdb1ptf       5.859     0.236    14.162  HISTIDINE-CONTAINING PHOSPHOCARRIER PROTEIN (HPR)
REMARK                                          SCOP: A+B; Histidine-containing phosphocarrier proteins (HPr)
REMARK pdb1by9       5.198     0.214    11.804  MOLECULE: REGULATORY PROTEIN E2;
REMARK                                          SCOP: A+B; Ferredoxin-like
REMARK pdb1ndd_A     5.101     0.211     0.332  MOLECULE: NEDD8;
REMARK                                          SCOP: A+B; beta-Grasp (ubiquitin-like)
MODEL  1
REMARK Sequence alignment follows:
REMARK t0121           1 MAGVRLVDVWKVFGEVTAVRELSLEVKDGEFMILLGPSGCGKTTTLRMIA
REMARK                     #|.|.||:#  || : |. |.|.||.|.:.:||||.|||#:  ||:|:
REMARK pdb1b0u_A       1 .NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCIN
REMARK 
REMARK t0121          51 GLEEPSRGQIYI.GDRL.VADPEKG.IFV...PPKDR...DIAMVFQSYA
REMARK                   #.| |.:| |.| |:.| | ||||| : |   :|:.:   ||# |#:|. 
REMARK pdb1b0u_A      50 FLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN
REMARK 
REMARK t0121          92 LYPHMTVYDNI.AFPLKLRKVPRQEIDQRVREVAELLGLT.ELLNRKPRE
REMARK                   .#|. .: . : . : |    |.:||.||::: || ||:| | || :.::
REMARK pdb1b0u_A     100 LWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVH
REMARK 
REMARK t0121         140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL
REMARK                   ||  :: |||| :|:. :|||:||| :::| : |   .:.. |:.| .| 
REMARK pdb1b0u_A     150 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE.
REMARK 
REMARK t0121         190 GVTTIYVTHDQVEAMT.MGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAG
REMARK                   |  :|...|: :|||:   .|| |:.|| || #|..||||..| . #|. 
REMARK pdb1b0u_A     199 GKTMVVVTHE.MGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQ
REMARK 
REMARK t0121         239 FIGSPPMNFLDAIVTEDGFVDFGEFRLKLLPDQFEVLGELGYVGREVIFG
REMARK                   ||  .|                                            
REMARK pdb1b0u_A     248 FLKGSLKKLEH.......................................
REMARK 
REMARK t0121         289 IRPEDLYDAMFARVRVPGENLVRAVVEIVENLGSERIVHLRVGGVTFVGA
REMARK                                                                     
REMARK pdb1b0u_A     259 ..................................................
REMARK 
REMARK t0121         339 FRSESRVREGVEVDVVFDMKKIHIFDKTTGKAIF
REMARK                                                     
REMARK pdb1b0u_A     259 ..................................
REMARK 
PARENT 1b0u_A
A 2  N 5
G 3  K 6
V 4  L 7
R 5  H 8
L 6  V 9
V 7  I 10
D 8  D 11
V 9  L 12
W 10  H 13
K 11  K 14
V 12  R 15
F 13  Y 16
G 14  G 17
E 15  G 18
V 16  H 19
T 17  E 20
A 18  V 21
V 19  L 22
R 20  K 23
E 21  G 24
L 22  V 25
S 23  S 26
L 24  L 27
E 25  Q 28
V 26  A 29
K 27  R 30
D 28  A 31
G 29  G 32
E 30  D 33
F 31  V 34
M 32  I 35
I 33  S 36
L 34  I 37
L 35  I 38
G 36  G 39
P 37  S 40
S 38  S 41
G 39  G 42
C 40  S 43
G 41  G 44
K 42  K 45
T 43  S 46
T 44  T 47
T 45  F 48
L 46  L 49
R 47  R 50
M 48  C 51
I 49  I 52
A 50  N 53
G 51  F 54
L 52  L 55
E 53  E 56
E 54  K 57
P 55  P 58
S 56  S 59
R 57  E 60
G 58  G 61
Q 59  A 62
I 60  I 63
Y 61  I 64
I 62  V 65
G 63  G 67
D 64  Q 68
R 65  N 69
L 66  I 70
V 67  L 72
A 68  V 73
D 69  R 74
P 70  D 75
E 71  K 76
K 72  D 77
G 73  G 78
I 74  L 80
F 75  K 81
V 76  V 82
P 77  N 86
P 78  Q 87
K 79  L 88
D 80  R 89
R 81  L 90
D 82  R 94
I 83  L 95
A 84  T 96
M 85  M 97
V 86  V 98
F 87  F 99
Q 88  Q 100
S 89  H 101
Y 90  F 102
A 91  N 103
L 92  L 104
Y 93  W 105
P 94  S 106
H 95  H 107
M 96  M 108
T 97  T 109
V 98  V 110
Y 99  L 111
D 100  E 112
N 101  N 113
I 102  V 114
A 103  E 116
F 104  A 117
P 105  P 118
L 106  I 119
K 107  Q 120
L 108  V 121
R 109  L 122
K 110  G 123
V 111  L 124
P 112  S 125
R 113  K 126
Q 114  H 127
E 115  D 128
I 116  A 129
D 117  R 130
Q 118  E 131
R 119  R 132
V 120  A 133
R 121  L 134
E 122  K 135
V 123  Y 136
A 124  L 137
E 125  A 138
L 126  K 139
L 127  V 140
G 128  G 141
L 129  I 142
T 130  D 143
E 131  R 145
L 132  A 146
L 133  Q 147
N 134  G 148
R 135  K 149
K 136  Y 150
P 137  P 151
R 138  V 152
E 139  H 153
L 140  L 154
S 141  S 155
G 142  G 156
G 143  G 157
Q 144  Q 158
R 145  Q 159
Q 146  Q 160
R 147  R 161
V 148  V 162
A 149  S 163
L 150  I 164
G 151  A 165
R 152  R 166
A 153  A 167
I 154  L 168
V 155  A 169
R 156  M 170
K 157  E 171
P 158  P 172
Q 159  D 173
V 160  V 174
F 161  L 175
L 162  L 176
M 163  F 177
D 164  D 178
E 165  E 179
P 166  P 180
L 167  T 181
S 168  S 182
N 169  A 183
L 170  L 184
D 171  D 185
A 172  P 186
K 173  E 187
L 174  L 188
R 175  V 189
V 176  G 190
R 177  E 191
M 178  V 192
R 179  L 193
A 180  R 194
E 181  I 195
L 182  M 196
K 183  Q 197
K 184  Q 198
L 185  L 199
Q 186  A 200
R 187  E 201
Q 188  E 202
G 190  G 203
V 191  K 204
T 192  T 205
T 193  M 206
I 194  V 207
Y 195  V 208
V 196  V 209
T 197  T 210
H 198  H 211
D 199  E 212
V 201  M 213
E 202  G 214
A 203  F 215
M 204  A 216
T 205  R 217
M 206  V 219
G 207  S 220
D 208  S 221
R 209  H 222
I 210  V 223
A 211  I 224
V 212  F 225
M 213  L 226
N 214  H 227
R 215  Q 228
G 216  G 229
V 217  K 230
L 218  I 231
Q 219  E 232
Q 220  E 233
V 221  E 234
G 222  G 235
S 223  D 236
P 224  P 237
D 225  E 238
E 226  Q 239
V 227  V 240
Y 228  F 241
D 229  G 242
K 230  N 243
P 231  P 244
A 232  Q 245
N 233  S 246
T 234  P 247
F 235  R 248
V 236  L 249
A 237  Q 250
G 238  Q 251
F 239  F 252
I 240  L 253
G 241  K 254
S 242  G 255
P 243  S 256
P 244  L 257
TER
REMARK Sequence alignment follows:
REMARK t0121c4         1 .....MNFLDAIVTEDGFVDFGEFRLKLLPDQFEVLGELGYVGREVI..F
REMARK                        ::.| .|| ..|:    .|| :|.: #:. | ||  |: |.|  |
REMARK pdb1b4f_A       1 PDYTSFNTVDEWLEAIKMG...QYKESFANAGFTSFDVVSQMMMEDILRV
REMARK 
REMARK t0121c4        44 GIRPEDLYDAMFA..............
REMARK                   ||:||: :.:|.:              
REMARK pdb1b4f_A      48 GVTLAGHQKKILNSIQVMRAQMNQIQS
REMARK 
PARENT 1b4f_A
M 245  F 11
N 246  N 12
F 247  T 13
L 248  V 14
D 249  D 15
A 250  E 16
I 251  W 17
V 252  L 18
T 253  E 19
E 254  A 20
D 255  I 21
G 256  K 22
F 257  M 23
V 258  G 24
E 262  Q 25
F 263  Y 26
R 264  K 27
L 265  E 28
K 266  S 29
L 267  F 30
L 268  A 31
P 269  N 32
D 270  A 33
Q 271  G 34
F 272  F 35
E 273  T 36
V 274  S 37
L 275  F 38
G 276  D 39
E 277  V 40
L 278  V 41
G 279  S 42
Y 280  Q 43
V 281  M 44
G 282  M 45
R 283  M 46
E 284  E 47
V 285  D 48
I 286  I 49
F 287  V 52
G 288  G 53
I 289  V 54
R 290  T 55
P 291  L 56
E 292  A 57
D 293  G 58
L 294  H 59
Y 295  Q 60
D 296  K 61
A 297  K 62
M 298  I 63
F 299  L 64
A 300  N 65
TER
REMARK Sequence alignment follows:
REMARK t0121c3         1 .YDAMFARVRVPG...ENLVRAVVEIVENLGSERIVHLRVGGVTF.VGAF
REMARK                    . . | .|. ||   :.:|:.|:| ||:. ..  | |.|.|.:| .   
REMARK pdb1opd         1 MFEQEV.TITAPNGLHTRPAAQFVKEAKGFTSE..ITVTSNGKSASAKDL
REMARK 
REMARK t0121c3        46 R..SESRVREGVEVDVVFDMKKIHIFDKTTGKAIF...
REMARK                   :  :: :|  |. | |.| #|..  |#|.  |:|    
REMARK pdb1opd        48 FKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE
REMARK 
PARENT 1opd
R 301  T 7
V 302  I 8
R 303  T 9
V 304  A 10
P 305  P 11
G 306  N 12
E 307  T 16
N 308  R 17
L 309  P 18
V 310  A 19
R 311  A 20
A 312  Q 21
V 313  F 22
V 314  V 23
E 315  K 24
I 316  E 25
V 317  A 26
E 318  K 27
N 319  G 28
L 320  F 29
G 321  T 30
S 322  S 31
E 323  E 32
V 326  I 33
H 327  T 34
L 328  V 35
R 329  T 36
V 330  S 37
G 331  N 38
G 332  G 39
V 333  K 40
T 334  S 41
F 335  A 42
V 336  A 44
G 337  K 45
A 338  D 46
F 339  L 47
R 340  F 48
S 341  Q 51
E 342  T 52
S 343  L 53
R 344  G 54
V 345  L 55
R 346  T 56
E 347  Q 57
G 348  G 58
V 349  T 59
E 350  V 60
V 351  V 61
D 352  T 62
V 353  I 63
V 354  S 64
F 355  A 65
D 356  E 66
M 357  G 67
K 358  E 68
K 359  D 69
I 360  E 70
H 361  Q 71
I 362  K 72
F 363  A 73
D 364  V 74
K 365  E 75
T 366  H 76
T 367  L 77
G 368  V 78
K 369  K 79
A 370  L 80
I 371  M 81
F 372  A 82
TER
END


