
PFRMAT AL
TARGET T0121
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=7.48 
REMARK CONFIDENCE: CERTAIN   (99% confidence [ ZSCORE>=6.0 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1shka
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  4
PARENT 1shk_A
D  28     M     1 
G  29     T     2 
E  30     E     3 
F  31     P     4 
M  32     I     5 
I  33     F     6 
L  34     M     7 
L  35     V     8 
G  36     G     9 
P  37     A    10 
S  38     R    11 
G  39     G    12 
C  40     C    13 
G  41     G    14 
K  42     K    15 
T  43     T    16 
T  44     T    17 
T  45     V    18 
L  46     G    19 
R  47     R    20 
M  48     E    21 
I  49     L    22 
A  50     A    23 
G  51     R    24 
L  52     A    25 
E  53     V    31 
E  54     D    32 
P  55     T    33 
S  56     D    34 
R  57     I    35 
G  58     F    36 
Q  59     M    37 
I  60     Q    38 
Y  61     H    39 
I  62     T    40 
G  63     S    41 
D  64     G    42 
R  65     M    43 
L  66     T    44 
V  67     V    45 
A  68     A    46 
D  69     D    47 
P  70     V    48 
E  71     V    49 
K  72     A    50 
G  73     A    51 
I  74     E    52 
F  75     G    53 
V  76     W    54 
P  77     P    55 
P  78     G    56 
K  79     F    57 
D  80     R    58 
R  81     R    59 
D  82     R    60 
I  83     E    61 
A  84     S    62 
M  85     E    63 
V  86     A    64 
F  87     L    65 
Q  88     Q    66 
S  89     A    67 
Y  90     V    68 
A  91     A    69 
L  92     T    70 
Y  93     P    71 
P  94     N    72 
H  95     R    73 
M  96     V    74 
T  97     V    75 
V  98     A    76 
Y  99     T    77 
D 100     G    78 
N 101     G    79 
P 105     G    80 
L 106     M    81 
K 107     V    82 
L 108     L    83 
R 109     L    84 
K 110     E    85 
V 111     Q    86 
P 112     N    87 
R 113     R    88 
Q 114     Q    89 
E 115     F    90 
I 116     M    91 
D 117     R    92 
Q 118     A    93 
R 119     H    94 
V 120     G    95 
R 121     T    96 
E 122     V    97 
V 123     V    98 
A 124     Y    99 
E 125     L   100 
L 126     F   101 
L 127     A   102 
G 128     P   103 
L 129     A   104 
T 130     E   105 
E 131     E   106 
L 132     L   107 
L 133     A   108 
N 134     L   109 
R 135     R   110 
K 136     I   128 
P 137     A   129 
R 138     E   130 
E 139     E   131 
L 140     M   132 
S 141     E   133 
G 142     A   134 
G 143     V   135 
Q 144     L   136 
R 145     R   137 
Q 146     E   138 
R 147     R   139 
V 148     E   140 
A 149     A   141 
L 150     L   142 
G 151     Y   143 
R 152     Q   144 
A 153     D   145 
I 154     V   146 
V 155     A   147 
R 156     H   148 
Q 159     Y   149 
V 160     V   150 
F 161     V   151 
L 162     D   152 
M 163     A   153 
D 164     T   154 
E 165     Q   155 
P 166     P   156 
L 167     P   157 
S 168     A   158 
N 169     A   159 
L 170     I   160 
D 171     V   161 
A 172     C   162 
K 173     E   163 
L 174     L   164 
R 175     M   165 
V 176     Q   166 
R 177     T   167 
M 178     M   168 
R 179     R   169 
A 180     L   170 
E 181     P   171 
L 182     A   172 
K 183     A   173 
TER
END

