
PFRMAT AL
TARGET T0121
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
METHOD For this split domain, we have submitted the same alignment
METHOD (our top-ranking hit) for the homologous N-terminal domain
METHOD for all 5 models, while varying the C-terminal domain. Models
METHOD 1-5 correspond to ranks 1-5 for T0121_2, whilst all having the
METHOD same alignment (rank 1) for T0121_1.
MODEL 2
PARENT 1b0u_A
A    2 N 5
G    3 K 6
V    4 L 7
R    5 H 8
L    6 V 9
V    7 I 10
D    8 D 11
V    9 L 12
W   10 H 13
K   11 K 14
V   12 R 15
F   13 Y 16
G   14 G 17
E   15 G 18
V   16 H 19
T   17 E 20
A   18 V 21
V   19 L 22
R   20 K 23
E   21 G 24
L   22 V 25
S   23 S 26
L   24 L 27
E   25 Q 28
V   26 A 29
K   27 R 30
D   28 A 31
G   29 G 32
E   30 D 33
F   31 V 34
M   32 I 35
I   33 S 36
L   34 I 37
L   35 I 38
G   36 G 39
P   37 S 40
S   38 S 41
G   39 G 42
C   40 S 43
G   41 G 44
K   42 K 45
T   43 S 46
T   44 T 47
T   45 F 48
L   46 L 49
R   47 R 50
M   48 C 51
I   49 I 52
A   50 N 53
G   51 F 54
L   52 L 55
E   53 E 56
E   54 K 57
P   55 P 58
S   56 S 59
R   57 E 60
G   58 G 61
Q   59 A 62
I   60 I 63
Y   61 I 64
I   62 V 65
G   63 N 66
D   64 G 67
R   65 Q 68
L   66 N 69
V   67 I 70
A   68 N 71
D   69 K 81
P   70 V 82
E   71 A 83
K   72 D 84
G   73 K 85
I   74 N 86
F   75 Q 87
V   76 L 88
P   77 R 89
P   78 L 90
K   79 L 91
D   80 R 92
R   81 T 93
D   82 R 94
I   83 L 95
A   84 T 96
M   85 M 97
V   86 V 98
F   87 F 99
Q   88 Q 100
S   89 H 101
Y   90 F 102
A   91 N 103
L   92 L 104
Y   93 W 105
P   94 S 106
H   95 H 107
M   96 M 108
T   97 T 109
V   98 V 110
Y   99 L 111
D  100 E 112
N  101 N 113
I  102 V 114
A  103 M 115
F  104 E 116
P  105 P 118
L  106 I 119
K  107 Q 120
L  108 V 121
R  109 L 122
K  110 G 123
V  111 L 124
P  112 S 125
R  113 K 126
Q  114 H 127
E  115 D 128
I  116 A 129
D  117 R 130
Q  118 E 131
R  119 R 132
V  120 A 133
R  121 L 134
E  122 K 135
V  123 Y 136
A  124 L 137
E  125 A 138
L  126 K 139
L  127 V 140
G  128 G 141
L  129 I 142
T  130 D 143
E  131 E 144
L  132 R 145
L  133 A 146
N  134 G 148
R  135 K 149
K  136 Y 150
P  137 P 151
R  138 V 152
E  139 H 153
L  140 L 154
S  141 S 155
G  142 G 156
G  143 G 157
Q  144 Q 158
R  145 Q 159
Q  146 Q 160
R  147 R 161
V  148 V 162
A  149 S 163
L  150 I 164
G  151 A 165
R  152 R 166
A  153 A 167
I  154 L 168
V  155 A 169
R  156 M 170
K  157 E 171
P  158 P 172
Q  159 D 173
V  160 V 174
F  161 L 175
L  162 L 176
M  163 F 177
D  164 D 178
E  165 E 179
P  166 P 180
L  167 T 181
S  168 S 182
N  169 A 183
L  170 L 184
D  171 D 185
A  172 P 186
K  173 E 187
L  174 L 188
R  175 V 189
V  176 G 190
R  177 E 191
M  178 V 192
R  179 L 193
A  180 R 194
E  181 I 195
L  182 M 196
K  183 Q 197
K  184 Q 198
L  185 L 199
Q  186 A 200
R  187 E 201
Q  188 E 202
G  190 G 203
V  191 K 204
T  192 T 205
T  193 M 206
I  194 V 207
Y  195 V 208
V  196 V 209
T  197 T 210
H  198 H 211
D  199 E 212
Q  200 M 213
V  201 G 214
E  202 F 215
A  203 A 216
M  204 R 217
T  205 H 218
M  206 V 219
G  207 S 220
D  208 S 221
R  209 H 222
I  210 V 223
A  211 I 224
V  212 F 225
M  213 L 226
N  214 H 227
R  215 Q 228
G  216 G 229
V  217 K 230
L  218 I 231
Q  219 E 232
Q  220 E 233
V  221 E 234
G  222 G 235
S  223 D 236
P  224 P 237
D  225 E 238
E  226 Q 239
V  227 V 240
Y  228 F 241
D  229 G 242
K  230 N 243
P  231 P 244
A  232 Q 245
N  233 S 246
T  234 P 247
F  235 R 248
V  236 L 249
A  237 Q 250
G  238 Q 251
F  239 F 252
TER
END
PARENT 1b8a_A
L   293 M 1
Y   294 Y 2
D   295 R 3
A   296 T 4
M   297 H 5
F   298 Y 6
A   299 S 7
R   300 S 8
V   301 E 9
R   302 I 10
V   303 T 11
P   304 E 12
G   305 Q 17
E   306 K 18
N   307 V 19
L   308 K 20
V   309 V 21
R   310 A 22
A   311 G 23
V   312 W 24
V   313 V 25
E   314 W 26
I   315 E 27
V   316 V 28
E   317 K 29
N   318 D 30
L   319 L 31
G   320 G 32
S   321 G 33
E   322 I 34
R   323 K 35
I   324 F 36
V   325 L 37
H   326 W 38
L   327 I 39
R   328 R 40
V   329 D 41
G   330 R 42
G   331 D 43
V   332 G 44
T   333 I 45
F   334 V 46
V   335 V 71
G   336 V 72
A   337 A 73
F   338 V 74
R  339 E 75
S  340 G 76
E  341 V 77
S  342 V 78
R  343 N 79
V  344 F 80
R  345 T 81
E  346 P 82
G  347 K 83
V  348 A 84
E  349 K 85
V  350 L 86
D  351 G 87
V  352 F 88
V  353 E 89
F  354 I 90
D  355 L 91
M  356 P 92
K  357 E 93
K  358 K 94
I  359 I 95
H  360 V 96
I  361 V 97
F  362 L 98
D  363 R 100
K  364 A 101
T  365 E 102
T  366 T 103
TER
END

