
PFRMAT AL
TARGET T0121
AUTHOR 5505-7671-7042
REMARK model for C-term region of T0121
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 1be1
G 261    G  67
E 262    E  68
F 263    I  69
R 264    D  70
L 265    C  71
K 266    K  72
L 267    G  73
L 268    L  74
P 269    R  75
D 270    E  76
Q 271    K  77
F 272    C  78
E 273    D  79
V 274    E  80
L 275    A  81
G 276    G  82
E 277    L  83
L 278    K  84
G 279    G  85
Y 280    F  89
V 281    V  90
G 282    G  91
R 283    G  92
E 284    N  93
V 285    I  94
I 286    V  95
F 287    V  96
G 288    G  97
I 289    K  98
R 290    Q  99
P 291    P 102
E 292    E 105
D 293    Q 106
L 294    R 107
Y 295    F 108
D 296    K 109
A 297    A 110
M 298    M 111
F 299    F 113
A 300    D 114
R 301    R 115
V 302    V 116
R 303    Y 117
V 304    P 118
P 305    P 119
G 306    G 120
E 307    T 121
N 308    S 122
L 309    P 123
V 310    E 124
R 311    T 125
A 312    T 126
V 313    I 127
V 314    A 128
E 315    D 129
I 316    M 130
V 317    K 131
E 318    E 132
N 319    V 133
L 320    L 134
G 321    G 135
S 322    V 136
E 323    E 137
TER
END


