
PFRMAT AL
TARGET T0121
AUTHOR 5505-7671-7042
REMARK model for C-term region of T0121
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  4
PARENT 3ubp_B
D 270    N   5
Q 271    Y   6
F 272    I   7
E 273    V   8
V 274    P   9
L 275    G  10
G 276    E  11
E 277    Y  12
L 278    R  13
G 279    V  14
Y 280    A  15
V 281    E  16
G 282    G  17
R 283    E  18
I 289    I  19
R 290    E  20
P 291    I  21
E 292    N  22
D 293    A  23
L 294    G  24
Y 295    R  25
D 296    E  26
R 301    K  27
V 302    T  28
R 303    T  29
V 304    I  30
P 305    R  31
G 306    S  33
E 307    N  34
N 308    T  35
L 309    G  36
V 310    D  37
R 311    R  38
A 312    P  39
V 313    S  44
V 314    H  45
E 315    I  46
I 316    H  47
V 317    F  48
E 318    V  49
N 319    E  50
L 320    V  51
G 321    N  52
S 322    K  53
E 323    E  54
R 324    L  55
I 325    L  56
V 326    D  58
H 327    R  59
L 328    A  60
R 329    E  61
V 330    G  62
G 331    I  63
G 332    G  64
V 333    R  65
T 334    R  66
F 335    L  67
V 336    N  68
G 337    I  69
A 338    P  70
F 339    S  71
R 340    G  72
S 341    T  73
E 342    A  74
S 343    A  75
R 344    R  76
V 345    F  77
R 346    E  78
E 347    P  79
G 348    G  80
V 349    E  81
E 350    E  82
V 351    M  83
D 352    E  84
V 353    V  85
V 354    E  86
F 355    L  87
D 356    T  88
M 357    E  89
TER
END


