
PFRMAT SS
TARGET T0121
AUTHOR 9521-1365-5893
METHOD Program Name: PSIPRED
METHOD Synopsis: Neural network prediction based on PSIBLAST output
METHOD Five neural networks are used to predict secondary structure directly
METHOD from the profiles generated by PSIBLAST. Networks 1-4 predict
METHOD secondary structure, the 5th network filters the output of the first
METHOD level networks. The first level networks have 17*21 inputs and 75 hidden
METHOD units, the second level network has 17*3 inputs and 55 hidden units.
METHOD The networks have been trained on a set of 2937 proteins with
METHOD early-stopped training. 10% of the training data was used to detect
METHOD convergence.
METHOD The target sequence was scanned against a non-redundant databank of
METHOD filtered protein sequences (> 500,000 sequences), with 3 PSIBLAST
METHOD iterations.
MODEL  1
M C 0.98
A C 0.59
G E 0.32
V E 0.91
R E 0.96
L E 0.85
V E 0.25
D E 0.42
V E 0.64
W E 0.92
K E 0.93
V E 0.86
F E 0.22
G C 0.91
E C 0.88
V E 0.72
T E 0.86
A E 0.95
V E 0.57
R C 0.51
E C 0.70
L C 0.37
S C 0.01
L C 0.20
E E 0.62
V E 0.78
K C 0.88
D C 0.93
G C 0.84
E C 0.59
F E 0.81
M E 0.95
I E 0.94
L E 0.93
L E 0.74
G C 0.73
P C 0.85
S C 0.89
G C 0.92
C C 0.76
G C 0.01
K H 0.73
T H 0.89
T H 0.93
T H 0.96
L H 0.95
R H 0.96
M H 0.96
I H 0.89
A H 0.86
G H 0.46
L H 0.15
E C 0.67
E C 0.92
P C 0.92
S C 0.88
R C 0.84
G C 0.33
Q E 0.74
I E 0.93
Y E 0.91
I E 0.85
G C 0.75
D C 0.87
R E 0.79
L E 0.73
V C 0.41
A C 0.78
D C 0.84
P C 0.90
E C 0.91
K H 0.71
G H 0.81
I H 0.88
F H 0.51
V H 0.46
P H 0.79
P H 0.83
K H 0.55
D C 0.41
R C 0.76
D C 0.64
I C 0.03
A E 0.17
M E 0.85
V E 0.91
F E 0.80
Q C 0.89
S C 0.81
Y C 0.76
A C 0.73
L C 0.86
Y C 0.90
P C 0.71
H C 0.56
M C 0.69
T C 0.63
V H 0.81
Y H 0.87
D H 0.88
N H 0.90
I H 0.89
A H 0.92
F H 0.93
P H 0.93
L H 0.94
K H 0.90
L H 0.72
R C 0.40
K C 0.95
V C 0.95
P C 0.94
R H 0.88
Q H 0.97
E H 0.95
I H 0.95
D H 0.96
Q H 0.96
R H 0.97
V H 0.96
R H 0.96
E H 0.96
V H 0.94
A H 0.92
E H 0.87
L H 0.69
L H 0.34
G C 0.85
L C 0.36
T H 0.82
E H 0.70
L H 0.83
L H 0.44
N C 0.23
R C 0.50
K C 0.74
P C 0.22
R C 0.14
E C 0.14
L C 0.15
S C 0.84
G C 0.59
G H 0.17
Q H 0.03
R H 0.84
Q H 0.90
R H 0.95
V H 0.97
A H 0.97
L H 0.97
G H 0.98
R H 0.94
A H 0.95
I H 0.86
V H 0.41
R C 0.33
K C 0.93
P C 0.95
Q C 0.69
V E 0.89
F E 0.96
L E 0.95
M E 0.71
D C 0.18
E C 0.86
P C 0.80
L C 0.58
S C 0.40
N C 0.30
L C 0.51
D C 0.72
A H 0.87
K H 0.89
L H 0.90
R H 0.96
V H 0.97
R H 0.96
M H 0.97
R H 0.96
A H 0.96
E H 0.96
L H 0.96
K H 0.95
K H 0.96
L H 0.96
Q H 0.95
R H 0.92
Q H 0.71
L H 0.29
G C 0.94
V C 0.91
T E 0.87
T E 0.95
I E 0.97
Y E 0.95
V E 0.90
T E 0.29
H C 0.36
D C 0.93
Q H 0.92
V H 0.96
E H 0.95
A H 0.94
M H 0.84
T H 0.70
M H 0.40
G C 0.88
D C 0.75
R E 0.32
I E 0.55
A E 0.84
V E 0.84
M E 0.84
N C 0.22
R C 0.90
G C 0.90
V E 0.86
L E 0.93
Q E 0.95
Q E 0.89
V E 0.82
G C 0.85
S C 0.94
P H 0.95
D H 0.97
E H 0.96
V H 0.94
Y H 0.81
D H 0.62
K C 0.67
P C 0.97
A C 0.94
N C 0.87
T H 0.84
F H 0.93
V H 0.92
A H 0.92
G H 0.61
F H 0.27
I C 0.98
G C 0.97
S C 0.87
P C 0.86
P C 0.74
M E 0.13
N E 0.48
F E 0.49
L E 0.84
D E 0.91
A E 0.94
I E 0.95
V E 0.95
T E 0.63
E C 0.72
D C 0.85
G E 0.29
F E 0.73
V E 0.73
D E 0.51
F C 0.48
G C 0.89
E C 0.59
F E 0.37
R E 0.83
L E 0.92
K E 0.66
L E 0.20
L C 0.72
P C 0.32
D C 0.12
Q H 0.18
F H 0.58
E H 0.26
V H 0.38
L H 0.44
G H 0.30
E C 0.03
L C 0.41
G C 0.78
Y C 0.34
V C 0.48
G C 0.83
R C 0.69
E E 0.43
V E 0.80
I E 0.94
F E 0.95
G E 0.91
I E 0.70
R C 0.62
P C 0.34
E H 0.16
D H 0.28
L C 0.22
Y C 0.79
D C 0.12
A H 0.23
M H 0.29
F H 0.37
A C 0.14
R C 0.31
V C 0.45
R C 0.65
V C 0.80
P C 0.87
G C 0.77
E C 0.64
N E 0.05
L E 0.78
V E 0.91
R E 0.93
A E 0.95
V E 0.95
V E 0.96
E E 0.93
I E 0.93
V E 0.87
E E 0.38
N C 0.01
L C 0.51
G C 0.93
S C 0.82
E E 0.29
R E 0.37
I E 0.84
V E 0.94
H E 0.96
L E 0.95
R E 0.96
V E 0.71
G C 0.86
G C 0.91
V E 0.15
T E 0.79
F E 0.96
V E 0.96
G E 0.95
A E 0.93
F E 0.82
R C 0.91
S C 0.74
E C 0.49
S C 0.49
R C 0.60
V C 0.69
R C 0.89
E C 0.88
G C 0.92
V C 0.87
E E 0.89
V E 0.85
D E 0.93
V E 0.95
V E 0.95
F E 0.81
D C 0.84
M C 0.09
K H 0.17
K H 0.68
I E 0.41
H E 0.71
I E 0.81
F E 0.76
D C 0.58
K C 0.12
T H 0.40
T H 0.54
G C 0.50
K C 0.03
A C 0.16
I C 0.61
F C 0.96
END

