
PFRMAT AL
TARGET T0123
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 1mup
V    1 E 5
E    2 E 6
V    3 A 7
T    4 S 8
P    5 S 9
I    6 T 10
M    7 G 11
T    8 R 12
E    9 N 13
L   10 F 14
D   11 N 15
T   12 V 16
Q   13 E 17
K   14 K 18
V   15 I 19
A   16 N 20
G   17 G 21
T   18 E 22
W   19 W 23
H   20 H 24
T   21 T 25
V   22 I 26
A   23 I 27
M   24 L 28
A   25 A 29
V   26 S 30
S   27 D 31
D   28 K 32
V   29 R 33
S   30 E 34
L   31 K 35
L   32 I 36
D   33 E 37
A   34 D 38
K   35 N 39
S   37 G 40
P   38 N 41
L   39 F 42
K   40 R 43
A   41 L 44
Y   42 F 45
V   43 L 46
E   44 E 47
G   45 Q 48
L   46 I 49
K   47 H 50
P   48 V 51
T   49 L 52
E   51 E 53
G   52 N 54
D   53 S 55
L   54 L 56
E   55 V 57
I   56 L 58
L   57 K 59
L   58 F 60
Q   59 H 61
K   60 T 62
R   61 V 63
E   62 R 64
N   63 D 65
D   64 E 66
K   65 E 67
C   66 C 68
A   67 S 69
Q   68 E 70
E   69 L 71
V   70 S 72
L   71 M 73
L   72 V 74
A   73 A 75
K   74 D 76
K   75 K 77
T   76 T 78
D   77 E 79
I   78 K 80
P   79 A 81
A   80 G 82
V   81 E 83
F   82 Y 84
K   83 S 85
I   84 V 86
N   85 T 87
A   86 Y 88
L   87 D 89
D   88 G 90
E   89 F 91
N   90 N 92
Q   91 T 93
L   92 F 94
F   93 T 95
L   94 I 96
L   95 P 97
D   96 K 98
T   97 T 99
D   98 D 100
Y   99 Y 101
D  100 D 102
S  101 N 103
H  102 F 104
L  103 L 105
L  104 M 106
L  105 A 107
C  106 H 108
M  107 L 109
E  108 I 110
N  109 N 111
S  110 E 112
A  111 K 113
S  112 D 114
P  113 G 115
E  114 E 116
H  115 T 117
S  116 F 118
L  117 Q 119
V  118 L 120
C  119 M 121
Q  120 G 122
S  121 L 123
L  122 Y 124
A  123 G 125
R  124 R 126
T  125 E 127
L  126 P 128
E  127 D 129
V  128 L 130
D  129 S 131
D  130 S 132
Q  131 D 133
I  132 I 134
R  133 K 135
E  134 E 136
K  135 R 137
F  136 F 138
E  137 A 139
D  138 Q 140
A  139 L 141
L  140 C 142
K  141 E 143
T  142 E 144
L  143 H 145
S  144 G 146
V  145 I 147
P  146 R 149
M  147 E 150
R  148 N 151
I  149 I 152
L  150 I 153
P  151 D 154
A  152 L 155
Q  153 S 156
L  154 N 157
E  155 A 158
E  156 N 159
Q  157 R 160
C  158 C 161
TER
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