
PFRMAT AL
TARGET T0123
AUTHOR 6305-9733-7289
REMARK similar to 1dv9.
METHOD PSI-BLAST (Altschul et al., Nucl. Acids Res. 25, 3389-3402, 1997)
METHOD (-h 0.0005 -j 20) and iterative SCANPS
METHOD (Barton et al., 2000, http://barton.ebi.ac.uk/scanps/)
METHOD were run against a combined search set comprising the SWALL, PDB and ENSEMBL
METHOD sequence databases. In these runs, 1dv9 (chain A) was identified as a
METHOD homologue. All sequences hit with an E-val of less than 0.0005
METHOD were collected and aligned all_against_all using AMPS
METHOD (Barton, G. J., Methods in Enzymology 183, 403-428, 1990)
METHOD and one sequence was removed from any pair sharing greater than 75%
METHOD identity. These sequences were combined with t0123 and 1dv9_A, and
METHOD a multiple alignment was constructed by CLUSTALW (Higgins et al.,
METHOD Methods in Enz.266,383-402,1996.) The alignment between t0123
METHOD and 1dv9_A was extracted, and then edited by hand in the
METHOD Jalview alignment editor
METHOD (M. Clamp, URL: http://www2.ebi.ac.uk/~michele/jalview/contents.html).
MODEL  1
PARENT 1dv9_A
V 1 A A1
E 2 Y A2
V 3 V A3
T 4 T A4
P 5 Q A5
I 6 T A6
M 7 M A7
T 8 K A8
E 9 G A9
L 10 L A10
D 11 D A11
T 12 I A12
Q 13 Q A13
K 14 K A14
V 15 V A15
A 16 A A16
G 17 G A17
T 18 T A18
W 19 W A19
H 20 Y A20
T 21 S A21
V 22 L A22
A 23 A A23
M 24 M A24
A 25 A A25
V 26 A A26
S 27 S A27
D 28 D A28
V 29 I A29
S 30 S A30
L 31 L A31
L 32 L A32
D 33 D A33
A 34 A A34
K 35 Q A35
S 36 S A36
S 37 A A37
P 38 P A38
L 39 L A39
K 40 R A40
A 41 V A41
Y 42 Y A42
V 43 V A43
E 44 E A44
G 45 E A45
L 46 L A46
K 47 K A47
P 48 P A48
T 49 T A49
P 50 P A50
E 51 E A51
G 52 G A52
D 53 D A53
L 54 L A54
E 55 E A55
I 56 I A56
L 57 L A57
L 58 L A58
Q 59 Q A59
K 60 K A60
R 61 W A61
E 62 E A62
N 63 N A63
D 64 D A64
K 65 E A65
C 66 C A66
A 67 A A67
Q 68 Q A68
E 69 K A69
V 70 K A70
L 71 I A71
L 72 I A72
A 73 A A73
K 74 E A74
K 75 K A75
T 76 T A76
D 77 K A77
I 78 I A78
P 79 P A79
A 80 A A80
V 81 V A81
F 82 F A82
K 83 K A83
I 84 I A84
N 85 D A85
A 86 A A86
L 87 L A87
D 88 N A88
E 89 E A89
N 90 N A90
Q 91 K A91
L 92 V A92
F 93 L A93
L 94 V A94
L 95 L A95
D 96 D A96
T 97 T A97
D 98 D A98
Y 99 Y A99
D 100 K A100
S 101 K A101
H 102 Y A102
L 103 L A103
L 104 L A104
L 105 F A105
C 106 C A106
M 107 M A107
E 108 E A108
N 109 N A109
S 110 S A110
A 111 A A111
S 112 E A112
P 113 P A113
E 114 E A114
H 115 Q A115
S 116 S A116
L 117 L A117
V 118 V A118
C 119 C A119
Q 120 Q A120
S 121 C A121
L 122 L A122
A 123 V A123
R 124 R A124
T 125 T A125
L 126 P A126
E 127 E A127
V 128 V A128
D 129 D A129
D 130 D A130
Q 131 E A131
I 132 A A132
R 133 L A133
E 134 E A134
K 135 K A135
F 136 F A136
E 137 D A137
D 138 K A138
A 139 A A139
L 140 L A140
K 141 K A141
T 142 A A142
L 143 L A143
S 144 P A144
V 145 M A145
P 146 H A146
M 147 I A147
R 148 R A148
I 149 L A149
L 150 S A150
TER
END


