
PFRMAT AL
TARGET T0124
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=5.72 
REMARK CONFIDENCE: LIKELY    (95% confidence [ ZSCORE>=5.0 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hs1qoya
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  1
PARENT 1qoy_A
N  880        P    36
M  881        W    37
K  882        Q    38
E  883        T    39
V  884        F    40
T  885        D    41
Q  886        E    42
L  887        T    43
P  888        I    44
E  889        K    45
P  890        E    46
Q  891        L    47
T  892        S    48
A  893        R    49
S  894        F    50
L  895        K    51
A  896        Q    52
E  897        E    53
L  898        Y    54
Q  899        Q    56
Q  900        A    57
M  901        A    58
K  902        S    59
L  903        V    60
F  904        L    61
L  905        V    62
K  906        G    63
L  907        D    64
L  908        I    65
K  909        K    66
K  910        T    67
Q  911        L    68
E  912        L    69
K  913        M    70
E  914        D    71
L  915        S    72
K  916        Q    73
E  917        D    74
L  918        K    75
E  919        Y    76
R  920        F    77
K  921        E    78
G  922        A    79
S  923        T    80
K  924        Q    81
R  925        T    82
R  926        V    83
E  927        Y    84
E  928        E    85
L  929        W    86
L  930        C    87
Q  931        G    88
K  932        V    89
Y  933        A    90
S  934        T    91
V  935        Q    92
L  936        L    93
F  937        L    94
L  938        A    95
E  939        A    96
P  940        Y    97
V  941        I    98
Y  942        L    99
P  943        L   100
R  944        E   103
G  945        Y   104
L  979        N   105
D  980        E   106
S  981        K   107
Q  982        K   108
V  983        A   109
V  984        S   110
E  985        A   111
L  986        Q   112
K  987        K   113
E  988        D   114
R  989        I   115
L  990        L   116
E  991        I   117
M  992        K   118
E  993        V   119
L  994        L   120
I  995        D   121
H  996        D   122
L  997        G   123
G  998        I   124
E  999        T   125
E 1000        K   126
Y 1001        L   127
H 1002        N   128
D 1003        E   129
G 1004        A   130
I 1005        Q   131
R 1006        K   132
R 1007        S   133
R 1008        L   134
K 1009        L   135
E 1010        V   136
Q 1011        S   137
H 1012        S   138
A 1013        Q   139
T 1014        S   140
E 1015        F   141
Q 1016        N   142
T 1017        N   143
A 1018        A   144
K 1019        S   145
I 1020        G   146
T 1021        K   147
E 1022        L   148
L 1023        L   149
A 1024        A   150
R 1025        L   151
E 1026        D   152
K 1027        S   153
Q 1028        Q   154
I 1029        L   155
A 1030        T   156
E 1031        N   157
L 1032        D   158
K 1033         S   160
A 1034         E   161
L 1035         K   162
K 1036         S   163
E 1037         S   164
S 1038         Y   165
S 1039         F   166
E 1040         Q   167
S 1041         S   168
N 1042         Q   169
I 1043         V   170
K 1044         D   171
D 1045         K   172
I 1046         I   173
K 1047         R   174
K 1048         K   175
K 1049         E   176
L 1050         A   177
E 1051         Y   178
A 1052         A   179
K 1053         G   180
R 1054         A   181
L 1055         I   194
D 1056         S   195
R 1057         Y   196
I 1058         S   197
Q 1059         I   198
V 1060         A   199
M 1061         A   200
M 1062         G   201
R 1063         V   202
S 1064         V   203
T 1065         E   204
S 1066         G   205
D 1067         K   206
K 1068         L   207
A 1069         I   208
A 1070         P   209
Q 1071         E   210
E 1072         L   211
R 1073         K   212
L 1074         N   213
K 1075         K   214
K 1076         L   215
E 1077         K   216
I 1078         S   217
N 1079         V   218
N 1080         Q   219
S 1081         N   220
H 1082         F   221
I 1083         F   222
Q 1084         T   223
E 1085         T   224
V 1086         L   225
V 1087         S   226
Q 1088         N   227
T 1089         T   228
I 1090         V   229
K 1091         K   230
L 1092         Q   231
L 1093         A   232
T 1094         N   233
E 1095         K   234
K 1096         D   235
T 1097         I   236
A 1098         D   237
R 1099         A   238
Y 1100         A   239
Q 1101         K   240
Q 1102         L   241
K 1103         K   242
L 1104         L   243
E 1105         T   244
E 1106         T   245
K 1107         E   246
Q 1108         I   247
A 1109         A   248
E 1110         A   249
N 1111         I   250
L 1112         G   251
R 1113         E   252
A 1114         I   253
I 1115         K   254
Q 1116         T   255
E 1117         E   256
K 1118         T   257
E 1119         E   258
G 1120         V   264
Q 1121         D   265
L 1122         Y   266
Q 1123         D   267
Q 1124         D   268
E 1125         L   269
A 1126         M   270
V 1127         L   271
A 1128         S   272
E 1129         L   273
Y 1130         L   274
E 1131         K   275
E 1132         E   276
K 1133         A   277
L 1134         A   278
K 1135         K   279
T 1136         K   280
L 1137         M   281
T 1138         I   282
V 1139         N   283
E 1140         T   284
V 1141         C   285
Q 1142         N   286
E 1143         E   287
M 1144         Y   288
V 1145         Q   289
K 1146         K   290
N 1147         R   291
Y 1148         H   292
M 1149         G   293
K 1150         K   294
E 1151         K   295
V 1152         T   296
F 1153         L   297
P 1154         F   298
TER
END

