
PFRMAT AL
TARGET T0124
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 1
PARENT 1d7m_A
K  882 E 243
E  883 M 244
V  884 A 245
T  885 N 246
Q  886 R 247
L  887 L 248
P  888 A 249
E  889 G 250
P  890 L 251
Q  891 E 252
T  892 N 253
A  893 S 254
S  894 L 255
L  895 E 256
A  896 S 257
E  897 E 258
L  898 K 259
Q  899 V 260
Q  900 S 261
M  901 R 262
K  902 E 263
L  903 Q 264
F  904 L 265
L  905 I 266
K  906 K 267
L  907 Q 268
L  908 K 269
K  909 D 270
K  910 Q 271
Q  911 L 279
E  912 E 280
K  913 S 281
E  914 E 282
L  915 G 283
K  916 A 284
E  917 E 285
L  918 R 286
E  919 E 287
R  920 K 288
K  921 R 289
G  922 L 290
S  923 R 291
K  924 E 292
R  925 L 293
R  926 E 294
E  927 A 295
E  928 K 296
L  929 L 297
L  930 D 298
Q  931 E 299
K  932 T 300
Y  933 L 301
S  934 K 302
V  935 N 303
L  936 L 304
F  937 E 305
L  938 L 306
E  939 E 307
P  940 K 308
V  941 L 309
Y  942 A 310
P  943 R 311
R  944 M 312
G  945 E 313
L  979 L 314
D  980 E 315
S  981 A 316
Q  982 R 317
V  983 L 318
V  984 A 319
E  985 K 320
L  986 T 321
K  987 E 322
E  988 K 323
R  989 D 324
L  990 R 325
E  991 A 326
M  992 I 327
E  993 L 328
L  994 E 329
I  995 L 330
H  996 K 331
L  997 L 332
G  998 A 333
E  999 E 334
E  1000 A 335
Y  1001 I 336
H  1002 D 337
D  1003 E 338
G  1004 K 339
I  1005 S 340
R  1006 K 341
R  1007 L 342
R  1008 E 343
TER
END


