
PFRMAT AL
TARGET T0124
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 1dg3_A
N  880 N 289
M  881 G 290
K  882 P 291
E  883 R 292
V  884 L 293
T  885 E 294
Q  886 S 295
L  887 L 296
P  888 T 299
E  889 Y 300
P  890 V 301
Q  891 N 302
T  892 A 303
A  893 I 304
S  894 S 305
L  895 L 319
A  896 A 320
E  897 Q 321
L  898 I 322
Q  899 E 323
Q  900 N 324
M  901 S 325
K  902 A 326
L  903 A 327
F  904 V 328
L  905 Q 329
K  906 K 330
L  907 A 331
L  908 I 332
K  909 A 333
K  910 H 334
Q  911 Y 335
E  912 E 336
K  913 Q 337
E  914 Q 338
L  915 M 339
K  916 Q 351
E  917 E 352
L  918 L 353
E  919 L 354
R  920 D 355
K  921 L 356
G  922 H 357
S  923 R 358
K  924 D 359
R  925 S 360
R  926 E 361
E  927 R 362
E  928 E 363
L  929 A 364
L  930 I 365
Q  931 E 366
K  932 F 380
Y  933 Q 381
S  934 K 382
V  935 E 383
L  936 L 384
F  937 A 385
E  939 A 386
P  940 Q 387
V  941 L 388
Y  942 E 389
P  943 K 390
R  944 K 391
L  979 R 392
D  980 D 393
S  981 D 394
Q  982 F 395
V  983 C 396
V  984 K 397
E  985 Q 398
L  986 N 399
K  987 Q 400
E  988 E 401
R  989 A 402
L  990 S 403
E  991 S 404
M  992 D 405
E  993 R 406
L  994 C 407
I  995 S 408
H  996 G 409
L  997 L 410
G  998 L 411
E  999 Q 412
E  1000 V 413
Y  1001 I 414
H  1002 E 419
D  1003 E 420
G  1004 E 421
I  1005 V 422
R  1006 K 423
R  1007 A 424
R  1008 R 434
K  1009 L 435
E  1010 V 437
Q  1011 Q 438
H  1012 K 439
A  1013 L 440
T  1014 Q 441
E  1015 D 442
Q  1016 L 443
T  1017 K 444
A  1018 K 445
K  1019 K 446
I  1020 Y 447
T  1021 Y 448
E  1022 E 449
L  1023 Q 456
A  1024 A 457
R  1025 E 458
E  1026 E 459
K  1027 I 460
Q  1028 L 461
I  1029 Q 462
A  1030 T 463
E  1031 Y 464
L  1032 L 465
K 1033 K 466
A 1034 S 467
L 1035 K 468
K 1036 E 469
E 1037 S 470
S 1038 M 471
S 1039 T 472
E 1040 D 473
S 1041 A 474
N 1042 I 475
I 1043 L 476
K 1044 Q 477
D 1045 T 481
I 1046 L 482
K 1047 T 483
K 1048 E 484
K 1049 K 485
L 1050 E 486
E 1051 K 487
A 1052 E 488
K 1053 I 489
R 1054 E 490
L 1055 V 491
D 1056 E 492
R 1057 R 493
I 1058 V 494
Q 1059 K 495
V 1060 A 496
M 1061 E 497
M 1062 S 498
R 1063 A 499
S 1064 Q 500
T 1065 A 501
S 1066 S 502
D 1067 A 503
K 1068 K 504
A 1069 M 505
A 1070 L 506
Q 1071 H 507
E 1072 E 508
R 1073 M 509
L 1074 Q 510
K 1075 R 511
K 1076 K 512
E 1077 N 513
I 1078 E 514
N 1079 Q 515
N 1080 M 516
S 1081 M 517
H 1082 E 518
I 1083 Q 519
Q 1084 K 520
E 1085 E 521
V 1086 R 522
V 1087 S 523
Q 1088 E 526
T 1089 H 527
I 1090 L 528
K 1091 K 529
L 1092 Q 530
L 1093 L 531
T 1094 T 532
E 1095 E 533
K 1096 K 534
T 1097 M 535
A 1098 E 536
R 1099 N 537
Y 1100 D 538
Q 1101 R 539
Q 1102 V 540
K 1103 Q 541
L 1104 L 542
E 1105 L 543
E 1106 K 544
K 1107 E 545
Q 1108 Q 546
A 1109 E 547
E 1110 R 548
N 1111 T 549
L 1112 L 550
R 1113 A 551
A 1114 L 552
I 1115 K 553
Q 1116 L 554
E 1117 Q 555
K 1118 E 556
E 1119 Q 557
G 1120 E 558
Q 1121 Q 559
L 1122 L 560
Q 1123 L 561
Q 1124 K 562
E 1125 E 563
A 1126 G 564
V 1127 F 565
A 1128 Q 566
E 1129 K 567
Y 1130 E 568
E 1131 S 569
E 1132 R 570
K 1133 I 571
L 1134 M 572
K 1135 K 573
T 1136 N 574
L 1137 E 575
T 1138 I 576
V 1139 Q 577
E 1140 D 578
V 1141 L 579
Q 1142 Q 580
E 1143 T 581
M 1144 K 582
V 1145 M 583
TER
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