
PFRMAT AL
TARGET T0124
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 1av1_A
M  881 M 43
K  882 L 44
E  883 K 45
V  884 L 46
T  885 L 47
Q  886 D 48
L  887 N 49
P  888 W 50
E  889 D 51
P  890 S 52
Q  891 V 53
T  892 T 54
A  893 S 55
S  894 T 56
L  895 F 57
A  896 S 58
E  897 K 59
L  898 L 60
Q  899 R 61
Q  900 Q 63
M  901 L 64
K  902 G 65
L  903 P 66
F  904 V 67
L  905 T 68
K  906 Q 69
L  907 E 70
L  908 F 71
K  909 W 72
K  910 D 73
Q  911 N 74
E  912 E 76
K  913 K 77
E  914 E 78
L  915 T 79
K  916 E 80
E  917 G 81
L  918 L 82
E  919 R 83
R  920 Q 84
K  921 E 85
G  922 M 86
S  923 S 87
K  924 K 88
R  925 D 89
R  926 L 90
E  927 E 91
E  928 E 92
L  929 V 93
L  930 K 94
Q  931 A 95
K  932 K 96
L  938 V 97
E  939 Q 98
P  940 P 99
Y  942 Y 100
P  943 L 101
R  944 D 102
G  945 D 103
L  979 F 104
D  980 Q 105
S  981 K 106
Q  982 K 107
V  983 W 108
V  984 Q 109
E  985 E 110
L  986 E 111
K  987 M 112
E  988 E 113
R  989 L 114
L  990 Y 115
E  991 R 116
M  992 Q 117
E  993 K 118
L  994 V 119
I  995 E 120
H  996 P 121
L  997 L 122
G  998 R 123
E  999 A 124
E  1000 E 125
Y  1001 L 126
H  1002 Q 127
D  1003 E 128
G  1004 G 129
I  1005 A 130
R  1006 R 131
R  1007 Q 132
R  1008 K 133
K  1009 L 134
E  1010 H 135
Q  1011 E 136
A  1013 L 137
T  1014 Q 138
E  1015 E 139
Q  1016 K 140
T  1017 L 141
A  1018 S 142
K  1019 P 143
I  1020 L 144
T  1021 G 145
E  1022 E 146
L  1023 E 147
A  1024 M 148
R  1025 R 149
E  1026 D 150
K  1027 R 151
Q  1028 A 152
I  1029 R 153
A  1030 A 154
E  1031 H 155
L  1032 V 156
K 1033 D 157
A 1034 A 158
L 1035 L 159
K 1036 R 160
E 1037 T 161
S 1038 H 162
S 1039 L 163
E 1040 A 164
S 1041 P 165
N 1042 Y 166
I 1043 S 167
K 1044 D 168
D 1045 E 169
I 1046 L 170
K 1047 R 171
K 1048 Q 172
K 1049 R 173
L 1050 L 174
A 1052 A 175
K 1053 A 176
R 1054 R 177
L 1055 L 178
D 1056 E 179
R 1057 A 180
I 1058 L 181
Q 1059 K 182
V 1060 E 183
M 1061 N 184
M 1062 G 185
R 1063 G 186
S 1064 A 187
S 1066 R 188
D 1067 L 189
K 1068 A 190
A 1069 E 191
A 1070 Y 192
Q 1071 H 193
E 1072 A 194
R 1073 K 195
L 1074 A 196
K 1075 T 197
K 1076 E 198
E 1077 H 199
I 1078 L 200
N 1079 S 201
N 1080 S 204
S 1081 E 205
H 1082 K 206
I 1083 A 207
Q 1084 K 208
E 1085 P 209
V 1086 A 210
V 1087 L 211
Q 1088 E 212
T 1089 D 213
I 1090 L 214
K 1091 R 215
E 1095 Q 216
K 1096 G 217
T 1097 L 218
A 1098 L 219
R 1099 P 220
Y 1100 V 221
Q 1101 L 222
Q 1102 E 223
K 1103 S 224
L 1104 F 225
E 1105 K 226
E 1106 V 227
K 1107 S 228
Q 1108 F 229
A 1109 L 230
E 1110 S 231
N 1111 A 232
L 1112 L 233
R 1113 E 234
A 1114 E 235
I 1115 Y 236
Q 1116 T 237
E 1117 K 238
K 1118 K 239
E 1119 L 240
G 1120 N 241
Q 1121 T 242
L 1122 Q 243
TER
END


L  946 F 104
D  947 Q 105
S  948 K 106
Q  949 K 107
V  950 W 108
V  951 Q 109
E  952 E 110
L  953 E 111
K  954 M 112
E  955 E 113
R  956 L 114
L  957 Y 115
E  958 R 116
M  959 Q 117
E  960 K 118
L  961 V 119
I  962 E 120
H  963 P 121
L  964 L 122
G  965 R 123
E  966 A 124
E  967 E 125
Y  968 L 126
H  969 Q 127
D  970 E 128
G  971 G 129
I  972 A 130
R  973 R 131
R  974 Q 132
R  975 K 133
K  976 L 134
E  977 H 135
Q  978 E 136
A  980 L 137
T  981 Q 138
E  982 E 139
Q  983 K 140
T  984 L 141
A  985 S 142
K  986 P 143
I  987 L 144
T  988 G 145
E  989 E 146
L  990 E 147
A  991 M 148
R  992 R 149
E  993 D 150
K  994 R 151
Q  995 A 152
I  996 R 153
A  997 A 154
E  998 H 155
L  999 V 156
K 1000 D 157
A 1001 A 158
L 1002 L 159
K 1003 R 160
E 1004 T 161
S 1005 H 162
S 1006 L 163
E 1007 A 164
S 1008 P 165
N 1009 Y 166
I 1010 S 167
K 1011 D 168
D 1012 E 169
I 1013 L 170
K 1014 R 171
K 1015 Q 172
K 1016 R 173
L 1017 L 174
A 1019 A 175
K 1020 A 176
R 1021 R 177
L 1022 L 178
D 1023 E 179
R 1024 A 180
I 1025 L 181
Q 1026 K 182
V 1027 E 183
M 1028 N 184
M 1029 G 185
R 1030 G 186
S 1031 A 187
S 1033 R 188
D 1034 L 189
K 1035 A 190
A 1036 E 191
A 1037 Y 192
Q 1038 H 193
E 1039 A 194
R 1040 K 195
L 1041 A 196
K 1042 T 197
K 1043 E 198
E 1044 H 199
I 1045 L 200
N 1046 S 201
N 1047 S 204
S 1048 E 205
H 1049 K 206
I 1050 A 207
Q 1051 K 208
E 1052 P 209
V 1053 A 210
V 1054 L 211
Q 1055 E 212
T 1056 D 213
I 1057 L 214
K 1058 R 215
E 1062 Q 216
K 1063 G 217
T 1064 L 218
A 1065 L 219
R 1066 P 220
Y 1067 V 221
Q 1068 L 222
Q 1069 E 223
K 1070 S 224
L 1071 F 225
E 1072 K 226
E 1073 V 227
K 1074 S 228
Q 1075 F 229
A 1076 L 230
E 1077 S 231
N 1078 A 232
L 1079 L 233
R 1080 E 234
A 1081 E 235
I 1082 Y 236
Q 1083 T 237
E 1084 K 238
K 1085 K 239
E 1086 L 240
G 1087 N 241
Q 1088 T 242
L 1089 Q 243
TER
END

