
PFRMAT AL
TARGET T0124
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  1
PARENT 1cun_A
E 985     Q  10
L 986     F  11
K 987     F  12
E 988     R  13
R 989     D  14
L 990     M  15
E 991     D  16
M 992     D  17
E 993     E  18
L 994     E  19
I 995     S  20
H 996     W  21
L 997     I  22
G 998     K  23
E 999     E  24
E 1000    K  25
Y 1001    K  26
H 1002    L  27
D 1003    L  28
G 1004    V  29
I 1005    S  30
K 1009    S  31
E 1010    E  32
Q 1011    D  33
H 1012    Y  34
A 1013    G  35
T 1014    R  36
E 1015    D  37
Q 1016    L  38
T 1017    T  39
A 1018    G  40
K 1019    V  41
I 1020    Q  42
T 1021    N  43
E 1022    L  44
L 1023    R  45
A 1024    K  46
R 1025    K  47
E 1026    H  48
K 1027    K  49
Q 1028    R  50
I 1029    L  51
A 1030    E  52
E 1031    A  53
L 1032    E  54
K 1033    L  55
A 1034    A  56
L 1035    A  57
K 1036    H  58
E 1037    E  59
S 1038    P  60
S 1039    A  61
E 1040    I  62
S 1041    Q  63
N 1042    S  64
I 1043    V  65
K 1044    L  66
D 1045    D  67
I 1046    T  68
K 1047    G  69
K 1048    K  70
K 1049    K  71
L 1050    L  72
E 1051    S  73
A 1052    D  74
R 1057    E  82
I 1058    I  83
Q 1059    Q  84
V 1060    Q  85
M 1061    R  86
M 1062    L  87
R 1063    A  88
S 1064    Q  89
T 1065    F  90
S 1066    V  91
D 1067    D  92
K 1068    H  93
A 1069    W  94
A 1070    K  95
Q 1071    E  96
E 1072    L  97
R 1073    K  98
L 1074    Q  99
K 1075    L 100
K 1076    A 101
E 1077    A 102
I 1078    A 103
N 1079    R 104
N 1080    G 105
S 1081    Q 106
H 1082    R 107
I 1083    L 108
Q 1084    E 109
E 1085    E 110
V 1086    S 111
V 1087    L 112
Q 1088    E 113
T 1089    Y 114
I 1090    Q 115
K 1091    Q 116
L 1092    F 117
L 1093    V 118
T 1094    A 119
E 1095    N 120
K 1096    V 121
T 1097    E 122
A 1098    E 123
R 1099    E 124
Y 1100    E 125
Q 1101    A 126
Q 1102    W 127
K 1103    I 128
L 1104    N 129
E 1105    E 130
E 1106    K 131
K 1107    M 132
L 1122    D 142
Q 1123    T 143
Q 1124    L 144
E 1125    A 145
A 1126    A 146
V 1127    I 147
A 1128    Q 148
E 1129    G 149
Y 1130    L 150
E 1131    L 151
E 1132    K 152
K 1133    K 153
L 1134    H 154
K 1135    E 155
T 1136    A 156
L 1137    F 157
T 1138    E 158
V 1139    T 159
E 1140    D 160
V 1141    F 161
Q 1142    T 162
E 1143    V 163
M 1144    H 164
V 1145    K 165
K 1146    D 166
N 1147    R 167
Y 1148    V 168
M 1149    N 169
K 1150    D 170
TER
END


