
PFRMAT AL
TARGET T0124
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 2tma_A
E 991    E  54
M 992    D  55
E 993    E  56
L 994    L  57
I 995    D  58
H 996    K  59
L 997    Y  60
G 998    S  61
E 999    E  62
E 1000   A  63
Y 1001   L  64
H 1002   K  65
D 1003   D  66
G 1004   A  67
I 1005   Q  68
R 1006   E  69
R 1007   K  70
R 1008   L  71
K 1009   E  72
E 1010   E  75
Q 1011   K  76
H 1012   K  77
A 1013   A  78
T 1014   T  79
E 1015   D  80
Q 1016   A  81
T 1017   E  82
A 1018   A  83
K 1019   D  84
I 1020   V  85
T 1021   A  86
E 1022   S  87
L 1023   L  88
A 1024   N  89
R 1025   R  90
E 1026   R  91
K 1027   I  92
Q 1028   Q  93
I 1029   L  94
A 1030   V  95
E 1031   E  96
K 1033   E  97
A 1034   E  98
L 1035   L  99
K 1036   D 100
E 1037   R 101
S 1038   A 102
S 1039   Q 103
E 1040   E 104
S 1041   R 105
N 1042   L 106
I 1043   A 107
K 1044   T 108
D 1045   A 109
I 1046   L 110
K 1047   Q 111
K 1048   K 112
K 1049   L 113
L 1050   E 114
E 1051   E 115
A 1052   A 116
K 1053   E 117
R 1054   K 118
L 1055   A 119
D 1056   D 121
R 1057   E 122
I 1058   S 123
Q 1059   E 124
V 1060   R 125
M 1061   G 126
M 1062   M 127
R 1063   K 128
S 1064   V 129
T 1065   I 130
S 1066   E 131
D 1067   S 132
K 1068   R 133
A 1069   A 134
A 1070   Q 135
Q 1071   K 136
E 1072   D 137
R 1073   E 138
L 1074   E 139
K 1075   K 140
K 1076   M 141
E 1077   E 142
I 1078   I 143
N 1079   Q 144
N 1080   E 145
S 1081   I 146
H 1082   Q 147
I 1083   L 148
Q 1084   K 149
E 1085   E 150
V 1086   A 151
V 1087   K 152
Q 1088   H 153
T 1089   I 154
I 1090   A 155
K 1091   E 156
L 1092   D 157
L 1093   A 158
T 1094   D 159
E 1095   R 160
K 1096   K 161
T 1097   Y 162
A 1098   E 163
R 1099   E 164
Y 1100   V 165
Q 1101   A 166
Q 1102   R 167
K 1103   K 168
L 1104   L 169
E 1105   V 170
E 1106   I 171
K 1107   I 172
Q 1108   E 173
A 1109   S 174
E 1110   D 175
N 1111   L 176
L 1112   E 177
R 1113   R 178
A 1114   A 179
E 1117   E 180
K 1118   E 181
E 1119   R 182
G 1120   A 183
Q 1121   E 184
L 1122   L 185
Q 1123   S 186
Q 1124   E 187
E 1125   G 188
A 1126   K 189
V 1127   C 190
A 1128   A 191
E 1129   E 192
Y 1130   L 193
E 1131   E 194
E 1132   E 195
K 1133   E 196
L 1134   I 197
K 1135   K 198
T 1136   T 199
L 1137   V 200
T 1138   T 201
TER
END


