
PFRMAT AL
TARGET T0124
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  3
PARENT 1cii
A 1030    A 371
E 1031    E 372
L 1032    W 373
K 1033    D 374
A 1034    K 375
L 1035    L 376
K 1036    R 377
E 1037    Q 378
L 1050    E 391
E 1051    S 392
A 1052    A 393
K 1053    V 394
R 1054    N 395
L 1055    S 396
D 1056    A 397
R 1057    R 398
I 1058    N 399
Q 1059    N 400
V 1060    L 401
M 1061    S 402
M 1062    A 403
R 1063    R 404
S 1064    T 405
T 1065    N 406
S 1066    E 407
D 1067    Q 408
K 1068    K 409
A 1069    H 410
A 1070    A 411
Q 1071    N 412
E 1072    D 413
R 1073    A 414
L 1074    L 415
K 1075    N 416
K 1076    K 420
E 1077    E 421
I 1078    K 422
N 1079    E 423
N 1080    N 424
S 1081    I 425
H 1082    R 426
I 1083    N 427
Q 1084    Q 428
E 1085    L 429
V 1086    S 430
V 1087    G 431
Q 1088    I 432
T 1089    N 433
I 1090    Q 434
K 1091    K 435
L 1092    I 436
L 1093    A 437
T 1094    E 438
E 1095    E 439
K 1096    K 440
R 1099    R 441
Y 1100    K 442
Q 1101    Q 443
Q 1102    D 444
K 1103    E 445
L 1104    L 446
E 1105    K 447
E 1106    A 448
K 1107    K 450
Q 1108    D 451
A 1109    A 452
E 1110    I 453
N 1111    N 454
L 1112    L 460
R 1113    K 461
A 1114    S 462
I 1115    V 463
Q 1116    S 464
E 1117    E 465
K 1118    K 466
E 1119    Y 467
G 1120    G 468
Q 1121    A 469
L 1122    K 470
Q 1123    A 471
Q 1124    E 472
E 1125    Q 473
E 1132    G 480
K 1133    Q 481
L 1134    A 482
K 1135    K 483
T 1136    G 484
L 1137    K 485
T 1138    K 486
V 1139    I 487
E 1140    R 488
V 1141    V 490
Q 1142    E 491
E 1143    E 492
M 1144    A 493
V 1145    L 494
K 1146    K 495
N 1147    T 496
Y 1148    Y 497
M 1149    E 498
K 1150    K 499
E 1151    Y 500
TER
END


