
PFRMAT AL
TARGET T0124
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  4
PARENT 1sry_A
R 1025    R  19
E 1026    E  20
K 1027    K  21
Q 1028    G  22
I 1029    V  23
A 1030    A  24
E 1031    D  26
L 1032    L  27
K 1033    E  28
A 1034    A  29
L 1035    L  30
K 1036    L  31
S 1038    A  32
S 1039    L  33
E 1040    D  34
S 1041    R  35
N 1042    E  36
I 1043    V  37
K 1044    Q  38
D 1045    E  39
I 1046    L  40
K 1047    K  41
K 1048    K  42
K 1049    R  43
L 1050    L  44
E 1051    Q  45
A 1052    E  46
K 1053    V  47
R 1054    Q  48
L 1055    T  49
D 1056    E  50
R 1057    R  51
I 1058    N  52
Q 1059    Q  53
V 1060    V  54
M 1061    A  55
M 1062    K  56
R 1063    R  57
S 1064    V  58
T 1065    P  59
K 1068    K  60
A 1069    A  61
A 1070    P  62
Q 1071    P  63
E 1072    E  64
V 1086    L  69
V 1087    I  70
Q 1088    A  71
T 1089    R  72
I 1090    G  73
K 1091    K  74
L 1092    A  75
L 1093    L  76
T 1094    G  77
E 1095    E  78
K 1096    E  79
T 1097    A  80
A 1098    K  81
R 1099    R  82
Y 1100    L  83
Q 1101    E  84
Q 1102    E  85
K 1103    A  86
L 1104    L  87
E 1105    R  88
E 1106    E  89
K 1107    K  90
Q 1108    E  91
A 1109    A  92
E 1110    R  93
TER
END


