
PFRMAT AL
TARGET T0124
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  5
PARENT 1nfn
M 992    Q  58
E 993    E  59
L 994    L  60
I 995    R  61
H 996    A  62
L 997    L  63
G 998    M  64
E 999    D  65
E 1000    E  66
Y 1001    T  67
H 1002    M  68
D 1003    K  69
G 1004    E  70
I 1005    L  71
R 1006    K  72
R 1007    A  73
R 1008    Y  74
K 1009    K  75
E 1010    S  76
Q 1011    E  77
A 1013    L  78
T 1014    E  79
E 1015    E  80
Q 1016    Q  81
A 1030    K  95
E 1031    E  96
L 1032    L  97
K 1033    Q  98
A 1034    A  99
L 1035    A 100
K 1036    Q 101
E 1037    A 102
S 1038    R 103
S 1039    L 104
E 1040    G 105
S 1041    A 106
N 1042    D 107
I 1043    M 108
K 1044    E 109
D 1045    D 110
I 1046    V 111
K 1047    C 112
K 1048    G 113
K 1049    R 114
L 1050    L 115
E 1051    V 116
A 1052    Q 117
K 1053    Y 118
R 1054    R 119
D 1056    G 120
R 1057    E 121
I 1058    V 122
Q 1059    Q 123
V 1060    A 124
M 1061    M 125
M 1062    L 126
E 1072    V 135
R 1073    R 136
L 1074    L 137
K 1075    A 138
K 1076    S 139
E 1077    H 140
I 1078    L 141
N 1079    R 142
N 1080    K 143
S 1081    L 144
H 1082    R 145
Q 1084    K 146
E 1085    R 147
V 1086    L 148
V 1087    L 149
Q 1088    R 150
T 1089    D 151
I 1090    A 152
K 1091    D 153
L 1092    D 154
L 1093    L 155
T 1094    Q 156
E 1095    K 157
K 1096    R 158
T 1097    L 159
A 1098    A 160
R 1099    V 161
Y 1100    Y 162
Q 1101    Q 163
TER
END


