
PFRMAT SS
TARGET T0124
AUTHOR 9521-1365-5893
METHOD Program Name: PSIPRED
METHOD Synopsis: Neural network prediction based on PSIBLAST output
METHOD Five neural networks are used to predict secondary structure directly
METHOD from the profiles generated by PSIBLAST. Networks 1-4 predict
METHOD secondary structure, the 5th network filters the output of the first
METHOD level networks. The first level networks have 17*21 inputs and 75 hidden
METHOD units, the second level network has 17*3 inputs and 55 hidden units.
METHOD The networks have been trained on a set of 2937 proteins with
METHOD early-stopped training. 10% of the training data was used to detect
METHOD convergence.
METHOD The target sequence was scanned against a non-redundant databank of
METHOD filtered protein sequences (> 500,000 sequences), with 3 PSIBLAST
METHOD iterations.
MODEL  1
N C 0.98
M C 0.86
K C 0.80
E C 0.61
V C 0.46
T C 0.45
Q C 0.48
L C 0.42
P C 0.67
E C 0.72
P C 0.74
Q C 0.88
T C 0.87
A C 0.68
S C 0.88
L H 0.76
A H 0.90
E H 0.90
L H 0.93
Q H 0.92
Q H 0.71
M H 0.87
K H 0.94
L H 0.92
F H 0.91
L H 0.96
K H 0.95
L H 0.93
L H 0.91
K H 0.81
K H 0.73
Q H 0.65
E H 0.79
K H 0.88
E H 0.93
L H 0.94
K H 0.90
E H 0.92
L H 0.93
E H 0.85
R H 0.64
K H 0.39
G H 0.55
S H 0.75
K H 0.73
R H 0.79
R H 0.95
E H 0.94
E H 0.95
L H 0.97
L H 0.96
Q H 0.95
K H 0.89
Y H 0.78
S H 0.46
V H 0.15
L C 0.10
F C 0.44
L C 0.56
E C 0.47
P C 0.44
V C 0.40
Y C 0.35
P C 0.11
R C 0.33
G C 0.56
L C 0.56
D C 0.55
S H 0.64
Q H 0.83
V H 0.89
V H 0.92
E H 0.89
L H 0.89
K H 0.88
E H 0.84
R H 0.84
L H 0.84
E H 0.95
M H 0.93
E H 0.93
L H 0.93
I H 0.91
H H 0.79
L H 0.53
G H 0.54
E H 0.52
E H 0.41
Y H 0.14
H H 0.65
D H 0.89
G H 0.89
I H 0.96
R H 0.96
R H 0.95
R H 0.96
K H 0.97
E H 0.96
Q H 0.96
H H 0.95
A H 0.96
T H 0.96
E H 0.96
Q H 0.96
T H 0.96
A H 0.96
K H 0.96
I H 0.96
T H 0.96
E H 0.96
L H 0.96
A H 0.95
R H 0.95
E H 0.93
K H 0.92
Q H 0.95
I H 0.95
A H 0.95
E H 0.96
L H 0.96
K H 0.96
A H 0.96
L H 0.95
K H 0.91
E H 0.83
S H 0.62
S H 0.25
E C 0.20
S C 0.17
N C 0.18
I H 0.12
K H 0.19
D H 0.47
I H 0.54
K H 0.44
K H 0.82
K H 0.93
L H 0.89
E H 0.93
A H 0.95
K H 0.92
R H 0.90
L H 0.82
D H 0.83
R H 0.79
I H 0.89
Q H 0.92
V H 0.84
M H 0.63
M H 0.69
R H 0.90
S H 0.87
T H 0.78
S H 0.93
D H 0.78
K H 0.96
A H 0.97
A H 0.96
Q H 0.96
E H 0.96
R H 0.96
L H 0.96
K H 0.96
K H 0.95
E H 0.94
I H 0.92
N H 0.84
N H 0.87
S H 0.90
H H 0.92
I H 0.84
Q H 0.95
E H 0.94
V H 0.95
V H 0.96
Q H 0.96
T H 0.96
I H 0.96
K H 0.96
L H 0.96
L H 0.96
T H 0.96
E H 0.96
K H 0.96
T H 0.95
A H 0.95
R H 0.94
Y H 0.96
Q H 0.95
Q H 0.96
K H 0.96
L H 0.95
E H 0.95
E H 0.96
K H 0.95
Q H 0.95
A H 0.95
E H 0.96
N H 0.96
L H 0.96
R H 0.95
A H 0.94
I H 0.94
Q H 0.93
E H 0.89
K H 0.88
E H 0.88
G H 0.93
Q H 0.93
L H 0.94
Q H 0.95
Q H 0.96
E H 0.96
A H 0.96
V H 0.96
A H 0.96
E H 0.96
Y H 0.95
E H 0.96
E H 0.95
K H 0.92
L H 0.92
K H 0.82
T H 0.57
L C 0.18
T C 0.85
V H 0.82
E H 0.89
V H 0.89
Q H 0.94
E H 0.94
M H 0.94
V H 0.95
K H 0.93
N H 0.87
Y H 0.82
M H 0.55
K H 0.31
E H 0.62
V H 0.26
F C 0.79
P C 0.98
END

