
PFRMAT AL
TARGET T0125
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=24.60
REMARK CONFIDENCE: CERTAIN   (99% confidence [ ZSCORE>=6.0 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1lis
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  1
PARENT 1lis
F   1     V     6
D   2     E     7
D   3     P     8
V   4     K     9
V   5     F    10
V   6     L    11
S   7     N    12
R   8     K    13
Q   9     A    14
E  10     F    15
Q  11     E    16
S  12     V    17
Y  13     A    18
V  14     L    19
Q  15     K    20
R  16     V    21
G  17     Q    22
M  18     I    23
V  19     I    24
N  20     A    25
F  21     G    26
L  22     F    27
D  23     D    28
E  24     R    29
E  25     G    30
M  26     L    31
H  27     V    32
K  28     K    33
L  29     W    34
V  30     L    35
K  31     R    36
R  32     V    37
F  33     H    38
R  34     G    39
D  35     R    40
M  36     T    41
L  40     L    42
G  41     S    43
P  42     T    44
G  43     V    45
F  44     Q    46
V  45     K    47
F  46     K    48
L  47     A    49
L  48     L    50
K  49     Y    51
K  50     F    52
V  51     V    53
N  52     N    54
R  53     R    55
E  54     R    56
R  55     Y    57
M  56     M    58
M  57     Q    59
R  58     T    60
Y  59     H    61
C  60     W    62
M  61     A    63
D  62     N    64
Y  63     Y    65
A  64     M    66
R  65     L    67
Y  66     W    68
S  67     I    69
K  68     N    70
K  69     K    71
I  70     K    72
L  71     I    73
Q  72     D    74
L  73     A    75
K  74     L    76
H  75     G    77
L  76     R    78
P  77     T    79
V  78     P    80
N  79     V    81
K  80     V    82
K  81     G    83
T  82     D    84
L  83     Y    85
T  84     T    86
K  85     R    87
M  86     L    88
G  87     G    89
R  88     A    90
F  89     E    91
V  90     I    92
G  91     G    93
Y  92     R    94
R  93     R    95
N  94     I    96
Y  95     D    97
G  96     M    98
V  97     A    99
I  98     Y   100
R  99     F   101
E 100     Y   102
L 101     D   103
Y 102     F   104
A 103     L   105
D 104     K   106
V 105     D   107
G 111     K   108
F 112     N   109
R 113     M   110
G 114     I   111
P 115     P   112
K 116     K   113
M 117     Y   114
T 118     L   115
A 119     P   116
A 120     Y   117
M 121     M   118
R 122     E   119
K 123     E   120
Y 124     I   121
S 125     N   122
S 126     R   123
K 127     M   124
D 128     R   125
P 129     P   126
G 130     A   127
T 131     D   128
F 132     V   129
P 133     P   130
C 134     V   131
K 135     K   132
N 136     Y   133
E 137     M   134
TER
END

