
PFRMAT AL
TARGET T0125
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 1
PARENT 2lis_A
F    1 V 6
D    2 E 7
D    3 P 8
V    4 K 9
V    5 F 10
V    6 L 11
S    7 N 12
R    8 K 13
Q    9 A 14
E   10 F 15
Q   11 E 16
S   12 V 17
Y   13 A 18
V   14 L 19
Q   15 K 20
R   16 V 21
G   17 Q 22
M   18 I 23
V   19 I 24
N   20 A 25
F   21 G 26
L   22 F 27
D   23 D 28
E   24 R 29
K   28 G 30
L   29 L 31
V   30 V 32
K   31 K 33
R   32 W 34
F   33 L 35
R   34 R 36
D   35 V 37
M   36 H 38
R   37 G 39
W   38 R 40
N   39 T 41
L   40 L 42
G   41 S 43
P   42 T 44
G   43 V 45
F   44 Q 46
V   45 K 47
F   46 K 48
L   47 A 49
L   48 L 50
K   49 Y 51
K   50 F 52
V   51 V 53
N   52 N 54
R   53 R 55
E   54 R 56
R   55 Y 57
M   56 M 58
M   57 Q 59
R   58 T 60
Y   59 H 61
C   60 W 62
M   61 A 63
D   62 N 64
Y   63 Y 65
A   64 M 66
R   65 L 67
Y   66 W 68
S   67 I 69
K   68 N 70
K   69 K 71
I   70 K 72
L   71 I 73
Q   72 D 74
L   73 A 75
K   74 L 76
H   75 G 77
L   76 R 78
P   77 T 79
V   78 P 80
N   79 V 81
K   80 V 82
K   81 G 83
T   82 D 84
L   83 Y 85
T   84 T 86
K   85 R 87
M   86 L 88
G   87 G 89
R   88 A 90
F   89 E 91
V   90 I 92
G   91 G 93
Y   92 R 94
R   93 R 95
N   94 I 96
Y   95 D 97
R   99 M 98
E  100 A 99
L  101 Y 100
Y  102 F 101
A  103 Y 102
D  104 D 103
V  105 F 104
F  106 L 105
R  107 K 106
D  108 D 107
V  109 K 108
Q  110 N 109
R  113 M 110
G  114 I 111
P  115 P 112
K  116 K 113
M  117 Y 114
T  118 L 115
A  119 P 116
A  120 Y 117
M  121 M 118
R  122 E 119
K  123 E 120
Y  124 I 121
S  125 N 122
S  126 R 123
K  127 M 124
D  128 R 125
P  129 P 126
G  130 A 127
T  131 D 128
F  132 V 129
P  133 P 130
C  134 V 131
K  135 K 132
N  136 Y 133
E  137 M 134
TER
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