

PFRMAT AL
TARGET T0125
AUTHOR 9885-9936-6780
METHOD Smith-Waterman alignment of secondary structure
METHOD and sequence
MODEL 1
PARENT 2lyn_D
Q   11   K   13
S   12   A   14
Y   13   F   15
V   14   E   16
Q   15   V   17
R   16   A   18
G   17   L   19
M   18   K   20
V   19   V   21
N   20   Q   22
F   21   I   23
L   22   I   24
D   23   A   25
E   24   G   26
E   25   F   27
M   26   D   28
H   27   R   29
K   28   G   30
L   29   L   31
V   30   V   32
K   31   K   33
R   32   W   34
F   33   L   35
R   34   R   36
D   35   V   37
M   36   H   38
R   37   G   39
W   38   R   40
N   39   T   41
L   40   L   42
G   41   S   43
F   44   T   44
V   45   V   45
F   46   K   48
L   47   A   49
L   48   L   50
K   49   Y   51
K   50   F   52
V   51   V   53
N   52   N   54
R   53   R   55
E   54   R   56
R   55   Y   57
M   56   M   58
M   57   Q   59
R   58   T   60
Y   59   H   61
C   60   W   62
M   61   A   63
D   62   N   64
Y   63   Y   65
A   64   M   66
R   65   L   67
Y   66   W   68
S   67   N   70
K   68   K   71
K   69   K   72
I   70   I   73
L   71   D   74
Q   72   A   75
L   73   L   76
K   74   G   77
H   75   R   78
L   76   T   79
P   77   P   80
V   78   V   81
K   80   V   82
K   81   G   83
T   82   D   84
L   83   Y   85
T   84   T   86
K   85   R   87
M   86   L   88
G   87   G   89
R   88   A   90
F   89   E   91
V   90   I   92
G   91   G   93
Y   92   R   94
R   93   R   95
N   94   A   99
Y   95   Y  100
Y  102   F  101
A  103   Y  102
D  104   D  103
V  105   F  104
F  106   L  105
R  107   K  106
D  108   D  107
Q  110   K  108
R  113   M  110
G  114   I  111
P  115   P  112
K  116   K  113
M  117   Y  114
T  118   L  115
A  119   P  116
A  120   Y  117
M  121   M  118
R  122   E  119
K  123   E  120
Y  124   I  121
S  125   N  122
S  126   R  123
K  127   M  124
D  128   R  125
P  129   P  126
G  130   A  127
T  131   D  128
F  132   V  129
P  133   P  130
C  134   V  131
K  135   K  132
N  136   Y  133
E  137   M  134
TER
END
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Ajay K. Royyuru, PhD                   Phone: (914) 945-1335
Manager, Structural Biology            Fax: (914) 945-4104
Computational Biology Center          mailto:ajayr@us.ibm.com
IBM Research                                 --- IBM Internal ---
T. J. Watson Research Center           Phone: T/L 862-1335
P.O. Box 218, Route 134                  Fax: T/L 862-4104
Yorktown Heights, NY 10598            Office: 13-106D


