
PFRMAT SS
TARGET T0125
AUTHOR 9521-1365-5893
METHOD Program Name: PSIPRED
METHOD Synopsis: Neural network prediction based on PSIBLAST output
METHOD Five neural networks are used to predict secondary structure directly
METHOD from the profiles generated by PSIBLAST. Networks 1-4 predict
METHOD secondary structure, the 5th network filters the output of the first
METHOD level networks. The first level networks have 17*21 inputs and 75 hidden
METHOD units, the second level network has 17*3 inputs and 55 hidden units.
METHOD The networks have been trained on a set of 2937 proteins with
METHOD early-stopped training. 10% of the training data was used to detect
METHOD convergence.
METHOD The target sequence was scanned against a non-redundant databank of
METHOD filtered protein sequences (> 500,000 sequences), with 3 PSIBLAST
METHOD iterations.
MODEL  1
F C 0.98
D C 0.67
D C 0.46
V C 0.21
V E 0.23
V E 0.39
S E 0.32
R H 0.23
Q H 0.20
E H 0.27
Q H 0.40
S H 0.49
Y H 0.49
V H 0.61
Q H 0.71
R H 0.79
G H 0.87
M H 0.93
V H 0.97
N H 0.97
F H 0.94
L H 0.92
D H 0.93
E H 0.86
E H 0.92
M H 0.92
H H 0.87
K H 0.96
L H 0.97
V H 0.98
K H 0.97
R H 0.94
F H 0.90
R H 0.48
D H 0.18
M C 0.69
R C 0.88
W C 0.91
N C 0.85
L C 0.84
G C 0.90
P C 0.85
G C 0.72
F H 0.05
V H 0.11
F H 0.29
L H 0.36
L H 0.58
K H 0.69
K H 0.79
V H 0.77
N H 0.63
R H 0.93
E H 0.93
R H 0.95
M H 0.95
M H 0.93
R H 0.91
Y H 0.69
C H 0.25
M H 0.27
D H 0.22
Y H 0.90
A H 0.92
R H 0.94
Y H 0.95
S H 0.90
K H 0.81
K H 0.95
I H 0.91
L H 0.88
Q H 0.72
L H 0.27
K C 0.05
H C 0.78
L C 0.91
P C 0.93
V C 0.89
N C 0.89
K H 0.76
K H 0.83
T H 0.90
L H 0.92
T H 0.76
K H 0.56
M H 0.29
G H 0.02
R H 0.29
F H 0.22
V H 0.56
G H 0.40
Y H 0.13
R H 0.21
N H 0.24
Y H 0.39
G H 0.67
V H 0.62
I H 0.53
R H 0.63
E H 0.69
L H 0.70
Y H 0.48
A H 0.83
D H 0.79
V H 0.95
F H 0.93
R H 0.94
D H 0.91
V H 0.80
Q H 0.60
G H 0.39
F H 0.22
R C 0.46
G C 0.66
P C 0.57
K C 0.65
M C 0.83
T C 0.93
A H 0.83
A H 0.80
M H 0.87
R H 0.90
K H 0.86
Y H 0.66
S H 0.36
S C 0.55
K C 0.87
D C 0.83
P C 0.32
G C 0.45
T C 0.47
F C 0.68
P C 0.82
C C 0.79
K C 0.72
N C 0.28
E C 0.11
K C 0.36
R C 0.37
R C 0.81
G C 0.97
END

