
PFRMAT AL
TARGET T0126
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=2.66 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1an9a2
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  3
PARENT 1an9_A
M   1     L   195
A   2     Q   196
E   3     P   197
D   4     G   198
G   5     R   199
P   6     G   200
Q   7     Q   201
K   8     I   202
Q   9     I   203
Q  10     K   204
L  11     V   205
E  12     D   206
M  13     A   207
P  14     P   208
L  15     W   209
V  16     L   210
L  17     K   211
D  18     N   212
Q  19     F   213
D  20     I   214
L  21     I   215
T  22     T   216
Q  23     H   217
Q  24     D   218
M  25     L   219
R  26     E   220
L  27     R   221
R  28     G   222
V  29     I   223
E  30     Y   224
S  31     N   225
L  32     S   226
K  33     P   227
V  70     Y   228
V  71     I   229
L  72     I   230
D  73     P   231
K  74     G   232
P  75     L   233
G  76     Q   234
K  77     A   235
V  78     V   236
T  79     T   237
I  80     L   238
T  81     G   239
G  82     G   240
T  83     T   241
S  84     F   242
Q  85     Q   243
N  86     N   246
W  87     W   247
T  88     N   248
P  89     E   249
L  91     I   250
T  92     N   251
N  93     N   252
L  94     I   253
M  95     Q   254
T  96     D   255
R  97     H   256
Q  98     N   257
L  99     T   258
L 100     I   259
D 101     W   260
P 102     E   261
A 103     G   262
A 104     C   263
I 105     C   264
F 106     R   265
W 107     L   266
A 120     E   267
D 121     P   268
A 122     T   269
L 123     L   270
E 124     K   271
F 125     D   272
G 126     A   273
E 127     K   274
R 128     I   275
L 129     V   276
S 130     G   277
D 131     E   278
L 132     Y   279
A 133     T   280
K 134     G   281
I 135     F   282
R 136     R   283
K 137     P   284
V 138     V   285
M 139     R   286
Y 140     P   287
TER
END

