
PFRMAT AL
TARGET T0126
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=2.55 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: pentraxin
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  4
PARENT 1lim_A
M   1     P    13
A   2     S    14
D   4     S    15
G   5     S    16
P   6     P    17
Q   7     S    18
K   8     F    19
Q   9     P    20
Q  10     R    21
L  11     L    22
E  12     V    23
M  13     M    24
P  14     V    25
L  15     G    26
V  16     T    27
L  17     L    28
D  18     P    29
Q  19     Q    31
D  20     E    32
L  21     I    33
T  22     T    34
Q  23     L    35
Q  24     C    36
M  25     Y    37
R  26     W    38
L  27     F    39
R  28     K    40
V  29     V    41
E  30     N    42
S  31     R   42A
L  32     L    43
K  33     K    44
R  35     G    45
G  36     A    53
E  37     T    54
K  38     A    55
K  39     K    56
Q  40     K    57
D  41     D    58
G  42     N    59
E  43     E    60
K  44     L    61
L  45     L    62
I  46     T    63
R  47     L    64
P  48     I    65
A  49     D    66
E  50     E    67
S  51     Q    68
V  52     D    70
Y  53     F    71
R  54     L    72
L  55     F    73
D  56     N    74
F  57     V    75
I  58     H   75A
Q  59     G    76
Q  60     A    77
Q  61     P   77A
K  62     Q    78
L  63     L    79
Q  64     K    80
F  65     V    81
D  66     Q    82
H  67     C    83
W  68     P    85
N  69     N    86
V  70     T    97
V  71     W    98
L  72     S    99
D  73     S   100
K  74     W   101
P  75     E   102
G  76     G   103
K  77     E   104
V  78     A   105
T  79     T   106
I  80     I   107
T  81     A   108
G  82     V   109
T  83     D   110
S  84     G   111
Q  85     F   112
N  86     H   113
W  87     C   114
T  88     K  114A
P  89     G  114B
D  90     N   115
L  91     A   116
T  92     T   117
N  93     G   118
L  94     I   119
M  95     A   120
T  96     V   121
R  97     G   122
Q  98     R   123
L  99     T   124
L 100     L   125
D 101     S   126
P 102     Q   127
A 103     G   128
A 104     G   129
I 105     L   130
F 106     V   131
W 107     V   132
R 108     L   133
K 109     G   134
E 110     Q   135
D 111     D   136
S 112     Q   137
D 113     D   138
A 114     S   139
M 115     V   140
D 116     G   141
W 117     G   142
N 118     K   143
E 119     F   144
A 120     D   145
D 121     A   146
A 122     T   147
L 123     Q   148
E 124     S   149
F 125     L   150
G 126     E   151
E 127     G   152
R 128     E   153
L 129     L   154
S 130     S   155
D 131     E   156
L 132     L   157
A 133     N   158
K 134     L   159
I 135     W   160
R 136     N   161
K 137     T   162
V 138     V   163
M 139     L   164
Y 140     E   167
F 141     Q   168
L 142     I   169
I 143     K   170
T 144     Y   171
F 145     L   172
G 146     S   173
E 147     K   174
G 148     C  174A
V 149     A   175
E 150     H   176
P 151     P   177
A 152     S  177A
N 153     E  177B
L 154     R  177C
K 155     H  177D
A 156     I   178
S 157     Y   179
V 158     I   183
V 159     Q   184
F 160     W   185
N 161     D   186
Q 162     K   187
L 163     T   188
TER
END

