
PFRMAT AL
TARGET T0126
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 1
PARENT 1blk
A    2 G 1
E    3 S 2
D    4 V 3
G    5 A 4
P    6 P 5
Q    7 V 6
K    8 E 7
Q    9 T 8
L   11 L 9
E   12 E 10
M   13 V 11
P   14 E 12
L   15 K 13
V   16 W 14
L   17 F 15
D   18 F 16
Q   19 R 17
D   20 T 18
L   21 I 19
T   22 S 20
R   26 R 21
L   27 K 22
R   28 D 23
V   29 A 24
E   30 E 25
S   31 R 26
L   32 Q 27
K   33 L 28
Q   34 L 29
R   35 A 30
G   36 P 31
E   37 M 32
K   38 N 33
K   39 K 34
D   41 A 35
G   42 G 36
E   43 S 37
K   44 F 38
L   45 L 39
I   46 I 40
R   47 R 41
P   48 E 42
A   49 S 43
E   50 E 44
S   51 S 45
V   52 A 49
Y   53 F 50
R   54 S 51
L   55 L 52
D   56 S 53
F   57 V 54
I   58 I 57
Q   59 T 58
Q   60 T 59
Q   61 Q 60
K   62 G 61
L   63 E 62
Q   64 V 63
F   65 V 64
D   66 K 65
H   67 H 66
W   68 Y 67
N   69 K 68
V   70 I 69
V   71 R 70
L   72 S 71
D   73 L 72
K   74 D 73
P   75 N 74
G   76 G 75
K   77 G 76
V   78 Y 77
T   79 Y 78
I   80 I 79
T   81 S 80
G   82 P 81
Q   85 R 82
N   86 I 83
W   87 T 84
T   88 F 85
P   89 P 86
D   90 T 87
L   91 L 88
T   92 Q 89
N   93 A 90
L   94 L 91
M   95 V 92
T   96 Q 93
R   97 H 94
Q   98 Y 95
L   99 S 96
L  100 K 97
D  101 K 98
P  102 G 99
A  103 D 100
A  104 G 101
I  105 L 102
F  106 C 103
W  107 Q 104
R  108 K 105
K  109 T 107
E  110 L 108
D  111 P 109
S  112 C 110
D  113 V 111
A  114 N 112
M  115 L 113
D  116 A 114
TER
END

