
PFRMAT AL
TARGET T0126
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 2
PARENT 1csy_A
A    2 G 1
E    3 S 2
D    4 R 3
G    5 R 4
P    6 A 5
Q    7 S 6
K    8 V 7
Q    9 G 8
Q   10 S 9
L   11 H 10
E   12 E 11
M   13 K 12
P   14 M 13
L   15 P 14
V   16 W 15
L   17 F 16
D   18 H 17
Q   19 G 18
D   20 K 19
L   21 I 20
T   22 S 21
R   26 R 22
L   27 E 23
R   28 E 24
V   29 S 25
E   30 E 26
S   31 Q 27
L   32 I 28
K   33 V 29
Q   34 L 30
R   35 I 31
G   36 G 32
E   37 S 33
K   38 K 34
Q   40 T 35
D   41 N 36
G   42 G 37
E   43 K 38
K   44 F 39
L   45 L 40
I   46 I 41
R   47 R 42
P   48 A 43
A   49 R 44
E   50 D 45
S   51 N 46
V   52 S 49
Y   53 Y 50
R   54 A 51
L   55 L 52
D   56 C 53
F   57 L 54
I   58 L 55
Q   59 H 56
Q   60 E 57
Q   61 G 58
K   62 K 59
L   63 V 60
Q   64 L 61
H   67 H 62
W   68 Y 63
N   69 R 64
V   70 I 65
V   71 D 66
L   72 K 67
D   73 D 68
K   74 K 69
P   75 T 70
G   76 G 71
K   77 K 72
V   78 L 73
T   79 S 74
I   80 I 75
T   81 P 76
G   82 E 77
T   83 G 78
S   84 K 79
Q   85 K 80
N   86 D 82
W   87 T 83
T   88 L 84
P   89 W 85
D   90 Q 86
L   91 L 87
T   92 V 88
N   93 E 89
L   94 H 90
M   95 Y 91
T   96 S 92
R   97 Y 93
Q   98 V 101
L   99 L 102
L  100 T 103
D  101 V 104
P  102 P 105
A  103 C 106
R  108 Q 107
K  109 K 108
E  110 I 109
D  111 G 110
S  112 T 111
D  113 Q 112
TER
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