
PFRMAT AL
TARGET T0126
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 1aot_F
Q   10 S 1
L   11 I 2
E   12 Q 3
M   13 A 4
P   14 E 5
L   15 E 6
V   16 W 7
L   17 Y 8
D   18 F 9
Q   19 G 10
D   20 K 11
L   21 L 12
T   22 G 13
R   26 R 14
L   27 K 15
R   28 D 16
V   29 A 17
E   30 E 18
S   31 R 19
L   32 Q 20
K   33 L 21
Q   34 L 22
R   35 S 23
G   36 F 24
E   37 G 25
K   38 N 26
K   39 P 27
D   41 R 28
G   42 G 29
E   43 T 30
K   44 F 31
L   45 L 32
I   46 I 33
R   47 R 34
P   48 E 35
A   49 S 36
E   50 E 37
S   51 T 38
V   52 L 45
Y   53 S 46
R   54 I 47
L   55 R 48
D   56 D 49
F   57 W 50
I   58 D 51
Q   59 D 52
Q   60 M 53
Q   61 K 54
K   62 G 55
L   63 D 56
Q   64 H 57
F   65 V 58
D   66 K 59
H   67 H 60
W   68 Y 61
N   69 K 62
V   70 I 63
V   71 R 64
L   72 K 65
D   73 L 66
K   74 D 67
P   75 N 68
G   76 G 69
K   77 G 70
V   78 Y 71
T   79 Y 72
I   80 I 73
T   81 T 74
G   82 T 75
Q   85 R 76
N   86 A 77
W   87 Q 78
T   88 F 79
P   89 E 80
D   90 T 81
L   91 L 82
T   92 Q 83
N   93 Q 84
L   94 L 85
M   95 V 86
T   96 Q 87
R   97 H 88
Q   98 Y 89
L   99 S 90
L  100 E 91
D  101 R 92
P  102 A 93
A  103 A 94
A  104 G 95
I  105 L 96
F  106 S 97
W  107 S 98
R  108 R 99
K  109 V 102
E  110 P 103
D  111 S 104
S  112 H 105
D  113 K 106
TER
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