
PFRMAT AL
TARGET T0126
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 1lkk_A
L   11 L 122
E   12 E 123
M   13 P 124
P   14 E 125
L   15 P 126
V   16 W 127
L   17 F 128
D   18 F 129
Q   19 K 130
D   20 N 131
L   21 L 132
T   22 S 133
R   26 R 134
L   27 K 135
R   28 D 136
V   29 A 137
E   30 E 138
S   31 R 139
L   32 Q 140
K   33 L 141
Q   34 L 142
R   35 A 143
G   36 P 144
E   37 G 145
K   38 N 146
K   39 T 147
D   41 H 148
G   42 G 149
E   43 S 150
K   44 F 151
L   45 L 152
I   46 I 153
R   47 R 154
P   48 E 155
A   49 S 156
E   50 E 157
S   51 S 158
V   52 L 165
Y   53 S 166
R   54 V 167
L   55 R 168
D   56 D 169
F   57 F 170
I   58 D 171
Q   59 Q 172
Q   60 N 173
Q   61 Q 174
K   62 G 175
L   63 E 176
Q   64 V 177
F   65 V 178
D   66 K 179
H   67 H 180
W   68 Y 181
N   69 K 182
V   70 I 183
V   71 R 184
L   72 N 185
D   73 L 186
K   74 D 187
P   75 N 188
G   76 G 189
K   77 G 190
V   78 F 191
T   79 Y 192
I   80 I 193
T   83 S 194
S   84 P 195
Q   85 R 196
N   86 I 197
W   87 T 198
T   88 F 199
P   89 P 200
D   90 G 201
L   91 L 202
T   92 H 203
N   93 E 204
L   94 L 205
M   95 V 206
T   96 R 207
R   97 H 208
Q   98 Y 209
L   99 T 210
L  100 N 211
D  101 A 212
P  102 S 213
A  103 D 214
A  104 G 215
I  105 L 216
F  106 C 217
W  107 T 218
R  108 R 219
K  109 L 220
E  110 S 221
D  111 R 222
S  112 P 223
D  113 C 224
A  114 Q 225
M  115 T 226
TER
END

