
PFRMAT AL
TARGET T0126
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 5
PARENT 2pld_A
A    2 G 1
E    3 S 2
D    4 P 3
G    5 G 4
P    6 I 5
Q    7 H 6
K    8 E 7
Q    9 S 8
Q   10 K 9
L   11 E 10
E   12 W 11
M   13 Y 12
P   14 H 13
L   15 A 14
V   16 S 15
L   17 L 16
D   18 T 17
Q   19 R 18
D   20 A 19
L   21 Q 20
T   22 A 21
Q   23 E 22
Q   24 H 23
M   25 M 24
R   26 L 25
L   27 M 26
R   28 R 27
V   29 V 28
K   39 P 29
Q   40 R 30
D   41 D 31
G   42 G 32
E   43 A 33
K   44 F 34
L   45 L 35
I   46 V 36
R   47 R 39
P   48 N 40
A   49 E 41
E   50 P 42
S   51 N 43
V   52 S 44
Y   53 Y 45
R   54 A 46
L   55 I 47
D   56 S 48
F   57 F 49
I   58 R 50
Q   59 A 51
Q   60 E 52
Q   61 G 53
K   62 K 54
L   63 I 55
Q   64 K 56
H   67 H 57
W   68 C 58
N   69 R 59
V   70 V 60
V   71 Q 61
L   72 Q 62
D   73 E 63
G   76 G 64
K   77 Q 65
V   78 T 66
T   79 V 67
I   80 M 68
T   81 L 69
G   82 G 70
T   83 N 71
S   84 S 72
Q   85 E 73
T   88 F 74
P   89 D 75
D   90 S 76
L   91 L 77
T   92 V 78
N   93 D 79
L   94 L 80
M   95 I 81
T   96 S 82
R   97 Y 83
Q   98 Y 84
L   99 E 85
L  100 K 86
D  101 H 87
P  102 P 88
A  103 L 89
W  107 Y 90
R  108 R 91
K  109 K 92
E  110 E 101
D  111 E 102
S  112 N 103
D  113 S 104
A  114 S 105
TER
END

