
PFRMAT AL
TARGET T0126
AUTHOR 6801-5605-9478
REMARK
REMARK  Alignment of TARGET 0126 (Mu olfactory factor) with 1DMS
REMARK
REMARK                          METHODS
REMARK                          -------
METHOD  This alignment with the PDB file 1DMS was based on the
METHOD  result with PDB-Blast. A preliminary alignment with
METHOD  ClustalW showed some areas of identity.
METHOD  A multiple alignment with olfactory factors from murine
METHOD  human and Xenopus yielded the alignment used here.
METHOD  (The Blossom matrix and standard gapping parameters were
METHOD  used in Clustal W).
MODEL  1
PARENT 1DMS
M 1 P 557
A 2 A 558
E 3 F 559
D 4 D 560
G 5 A 561
P 6 F 562
Q 7 W 563
K 8 A 564
Q 9 E 565
TER
PARENT 1DMS
Q 10 I 567
L 11 V 568
E 12 E 569
M 13 F 570
P 14 P 571
L 15 V 572
V 16 T 573
L 17 D 574
D 18 G 575
Q 19 A 576
D 20 D 577
L 21 F 578
T 22 V 579
Q 23 R 580
Q 24 Y 581
M 25 A 582
R 26 S 583
L 27 F 584
R 28 R 585
TER
PARENT 1DMS
V 29 D 587
E 30 P 588
S 31 L 589
L 32 L 590
K 33 N 591
Q 34 P 592
R 35 L 593
G 36 G 594
E 37 T 595
K 38 P 596
K 39 T 597
Q 40 G 598
D 41 L 599
G 42 I 600
E 43 E 601
K 44 I 602
L 45 Y 603
I 46 S 604
R 47 K 605
P 48 N 606
A 49 I 607
E 50 E 608
S 51 K 609
V 52 M 610
Y 53 G 611
R 54 Y 612
L 55 D 613
D 56 D 614
F 57 C 615
I 58 P 616
Q 59 A 617
Q 60 H 618
TER
PARENT 1DMS
K 62 P 619
L 63 T 620
Q 64 W 621
F 65 M 622
D 66 E 623
H 67 P 624
W 68 L 625
N 69 E 626
V 70 R 627
TER
PARENT 1DMS
L 72 L 628
D 73 D 629
K 74 G 630
P 75 P 631
G 76 G 632
TER
PARENT 1DMS
K 77 P 636
V 78 L 637
T 79 H 638
I 80 I 639
T 81 A 640
G 82 A 641
T 83 S 642
S 84 H 643
TER
PARENT 1DMS
Q 85 F 645
N 86 N 646
W 87 R 647
T 88 L 648
P 89 H 649
D 90 S 650
L 91 Q 651
T 92 L 652
N 93 N 653
TER
PARENT 1DMS
L 94 T 655
M 95 V 656
T 96 L 657
R 97 R 658
Q 98 E 659
L 99 G 660
L 100 Y 661
D 101 A 662
TER
PARENT 1DMS
P 102 H 666
A 103 E 667
A 104 P 668
I 105 C 669
F 106 L 670
W 107 M 671
R 108 H 672
K 109 P 673
E 110 D 674
D 111 D 675
S 112 A 676
D 113 A 677
A 114 A 678
M 115 R 679
D 116 G 680
W 117 I 681
N 118 A 682
E 119 D 683
A 120 G 684
D 121 D 685
A 122 V 686
L 123 V 687
TER
PARENT 1DMS
E 124 D 692
F 125 R 693
G 126 G 694
E 127 Q 695
R 128 I 696
L 129 L 697
S 130 T 698
D 131 G 699
L 132 V 700
A 133 K 701
K 134 V 702
I 135 T 703
R 136 D 704
K 137 A 705
V 138 V 706
M 139 M 707
Y 140 K 708
F 141 G 709
L 142 V 710
I 143 I 711
T 144 Q 712
F 145 I 713
G 146 Y 714
E 147 E 715
G 148 G 716
TER
PARENT 1DMS
V 149 Y 719
E 150 D 720
P 151 P 721
A 152 S 722
N 153 D 723
L 154 V 724
K 155 T 725
A 156 E 726
S 157 A 727
V 158 G 728
V 159 T 729
F 160 L 730
N 161 D 731
Q 162 K 732
L 163 Y 733
TER
END




