
PFRMAT AL
TARGET T0126
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  1
PARENT 1cxz_B
G   5    G  30
P   6    V  31
Q   7    Q  32
Q   9    Q  33
Q  10    Q  34
L  11    L  35
E  12    E  36
M  13    L  37
P  14    E  38
L  15    R  39
V  16    E  40
L  17    L  42
D  18    R  43
Q  19    R  44
D  20    E  45
L  21    I  46
T  22    R  47
Q  23    K  48
Q  24    E  49
M  25    L  50
R  26    K  51
L  27    L  52
R  28    K  53
V  29    A  56
E  30    E  57
S  31    N  58
L  32    L  59
K  33    R  60
Q  34    R  61
R  35    A  62
G  36    G  67
E  37    R  68
K  38    S  69
K  39    L  70
Q  40    G  71
D  41    P  72
G  42    V  73
E  43    E  74
K  44    L  75
L  45    L  76
I  46    L  77
R  47    R  78
P  48    G  79
S  51    S  80
V  52    S  81
Y  53    R  82
R  54    R  83
L  55    L  84
D  56    D  85
F  57    L  86
I  58    L  87
Q  59    H  88
Q  60    Q  89
Q  61    Q  90
L  63    L  91
Q  64    Q  92
F  65    E  93
D  66    L  94
H  67    H  95
W  68    A  96
N  69    H  97
V  70    V  98
TER
END


