
PFRMAT AL
TARGET T0126
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  3
PARENT 1hrs
E  37    E  57
K  38    K  58
K  39    R  59
Q  40    E  60
D  41    G  61
G  42    A  62
E  43    E  63
K  44    R  64
L  45    L  65
I  46    L  66
R  47    K  67
P  48    Q  69
A  49    N  70
E  50    Q  71
S  51    R  72
V  52    G  73
Y  53    G  74
R  54    R  75
L  55    A  76
D  56    L  77
F  57    F  78
I  58    Q  79
Q  59    D  80
Q  60    L  81
Q  61    Q  82
K  62    K  83
L  63    P  84
Q  64    S  85
F  65    Q  86
D  66    D  87
H  67    E  88
W  68    W  89
N  69    G  90
V  70    T  91
V  71    T  92
L  72    L  93
D  73    D  94
K  74    A  95
P  75    M  96
G  76    K  97
K  77    A  98
V  78    A  99
T  79    I 100
I  80    V 101
T  81    L 102
G  82    E 103
T  83    K 104
S  84    S 105
Q  85    L 106
N  86    N 107
W  87    Q 108
T  88    A 109
P  89    L 110
D  90    D 112
L  91    L 113
T  92    H 114
N  93    A 115
L  94    L 116
M  95    G 117
T  96    S 118
R  97    A 119
Q  98    Q 120
L  99    A 121
D 101    D 122
P 102    P 123
A 103    H 124
A 104    L 125
TER
END


