
PFRMAT AL
TARGET T0126
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  4
PARENT 5aop
M  25    E 312
R  26    R 313
L  27    V 314
R  28    G 315
V  29    V 316
E  30    E 317
S  31    T 318
L  32    F 319
K  33    K 320
Q  34    A 321
R  35    E 322
G  36    V 323
E  37    E 324
K  38    R 325
K  39    R 326
Q  40    A 327
G  42    G 328
E  43    I 329
K  44    K 330
L  45    F 331
I  46    I 334
R  47    R 335
P  48    P 336
A  49    Y 337
E  50    E 338
S  51    F 339
V  52    T 340
Y  53    G 341
R  54    R 342
L  55    G 343
D  56    D 344
F  57    R 345
I  58    I 346
Q  59    G 347
Q  60    W 348
Q  61    V 349
K  62    K 350
L  63    G 351
Q  64    I 352
F  65    D 353
D  66    D 354
H  67    N 355
W  68    W 356
N  69    H 357
V  70    L 358
V  71    I 367
L  72    L 368
D  73    D 369
K  74    Y 370
P  75    P 371
G  76    A 372
K  77    R 373
V  78    P 374
T  79    L 375
I  80    K 376
T  81    T 377
G  82    G 378
T  83    L 379
TER
END


