
PFRMAT AL
TARGET T0126
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  5
PARENT 1i16
R  35    K  66
G  36    G  67
E  37    A  68
K  38    A  69
K  39    S  70
Q  40    E  71
D  41    Q  72
G  42    S  73
E  43    E  74
K  44    T  75
I  46    V  76
R  47    Q  77
P  48    P  78
A  49    G  79
E  50    D  80
S  51    E  81
V  52    I  82
Y  53    L  83
R  54    Q  84
L  55    L  85
D  56    G  86
F  57    G  87
I  58    T  88
Q  59    A  89
Q  60    M  90
Q  61    Q  91
K  62    G  92
L  63    L  93
Q  64    R  95
F  65    F  96
D  66    E  97
H  67    A  98
W  68    W  99
N  69    N 100
V  70    I 101
V  71    I 102
L  72    K 103
D  73    A 104
K  74    L 105
P  75    P 106
G  76    G 108
K  77    P 109
V  78    V 110
T  79    T 111
I  80    I 112
T  81    V 113
G  82    I 114
TER
END


