
PFRMAT SS
TARGET T0126
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0126.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 2.66497
METHOD
MODEL 1
M C 0.776
A C 0.687
E C 0.691
D C 0.723
G C 0.891
P C 0.835
Q C 0.789
K C 0.742
Q C 0.656
Q C 0.493
L C 0.457
E C 0.521
M C 0.703
P C 0.675
L E 0.549
V E 0.576
L C 0.532
D C 0.717
Q C 0.764
D C 0.747
L C 0.575
T C 0.539
Q C 0.429
Q C 0.420
M H 0.392
R H 0.401
L H 0.443
R H 0.461
V H 0.671
E H 0.704
S H 0.766
L H 0.799
K H 0.828
Q H 0.817
R H 0.623
G C 0.829
E C 0.820
K C 0.688
K C 0.605
Q C 0.607
D C 0.774
G C 0.609
E C 0.424
K C 0.387
L E 0.419
I C 0.522
R C 0.772
P C 0.795
A C 0.773
E C 0.572
S E 0.629
V E 0.816
Y E 0.833
R E 0.778
L E 0.698
D E 0.547
F C 0.475
I C 0.510
Q H 0.418
Q H 0.412
Q C 0.374
K C 0.368
L E 0.438
Q E 0.571
F E 0.575
D E 0.579
H E 0.679
W E 0.788
N E 0.891
V E 0.942
V E 0.942
L E 0.911
D E 0.670
K C 0.659
P C 0.828
G C 0.696
K E 0.740
V E 0.897
T E 0.919
I E 0.871
T E 0.599
G C 0.581
T C 0.651
S C 0.701
Q C 0.843
N C 0.891
W C 0.794
T C 0.832
P C 0.797
D C 0.861
L H 0.736
T H 0.742
N H 0.816
L H 0.812
M H 0.777
T H 0.752
R H 0.844
Q H 0.790
L H 0.683
L C 0.639
D C 0.908
P C 0.813
A C 0.733
A E 0.569
I E 0.820
F E 0.908
W E 0.807
R C 0.484
K C 0.749
E C 0.882
D C 0.713
S C 0.704
D C 0.702
A C 0.687
M C 0.639
D C 0.710
W H 0.488
N C 0.555
E H 0.884
A H 0.871
D H 0.896
A H 0.912
L H 0.922
E H 0.929
F H 0.902
G H 0.760
E H 0.897
R H 0.897
L H 0.976
S H 0.981
D H 0.989
L H 0.986
A H 0.992
K H 0.991
I H 0.986
R H 0.980
K H 0.961
V H 0.923
M H 0.769
Y H 0.561
F E 0.529
L E 0.835
I E 0.833
T E 0.768
F E 0.519
G C 0.842
E C 0.918
G C 0.941
V C 0.881
E C 0.924
P C 0.688
A C 0.598
N C 0.457
L E 0.557
K E 0.736
A E 0.776
S E 0.764
V E 0.762
V E 0.678
F E 0.486
N C 0.524
Q C 0.700
L C 0.937
END

