
PFRMAT SS
TARGET T0126
AUTHOR 9521-1365-5893
METHOD Program Name: PSIPRED
METHOD Synopsis: Neural network prediction based on PSIBLAST output
METHOD Five neural networks are used to predict secondary structure directly
METHOD from the profiles generated by PSIBLAST. Networks 1-4 predict
METHOD secondary structure, the 5th network filters the output of the first
METHOD level networks. The first level networks have 17*21 inputs and 75 hidden
METHOD units, the second level network has 17*3 inputs and 55 hidden units.
METHOD The networks have been trained on a set of 2937 proteins with
METHOD early-stopped training. 10% of the training data was used to detect
METHOD convergence.
METHOD The target sequence was scanned against a non-redundant databank of
METHOD filtered protein sequences (> 500,000 sequences), with 3 PSIBLAST
METHOD iterations.
MODEL  1
M C 0.98
A C 0.93
E C 0.89
D C 0.89
G C 0.85
P C 0.83
Q C 0.57
K C 0.37
Q C 0.26
Q C 0.23
L C 0.37
E C 0.48
M C 0.49
P C 0.28
L C 0.15
V C 0.19
L C 0.26
D C 0.20
Q C 0.17
D C 0.14
L H 0.48
T H 0.62
Q H 0.72
Q H 0.78
M H 0.84
R H 0.88
L H 0.89
R H 0.90
V H 0.91
E H 0.88
S H 0.87
L H 0.83
K H 0.61
Q H 0.36
R H 0.12
G C 0.85
E C 0.85
K C 0.51
K C 0.26
Q C 0.16
D C 0.14
G C 0.13
E H 0.22
K H 0.17
L H 0.10
I H 0.04
R C 0.19
P C 0.36
A C 0.29
E C 0.17
S C 0.05
V E 0.29
Y E 0.29
R E 0.17
L E 0.05
D C 0.04
F C 0.17
I C 0.29
Q H 0.01
Q H 0.15
Q H 0.12
K H 0.08
L E 0.01
Q E 0.20
F E 0.27
D E 0.30
H E 0.33
W E 0.56
N E 0.70
V E 0.78
V E 0.52
L E 0.26
D C 0.75
K C 0.84
P C 0.83
G C 0.82
K E 0.05
V E 0.49
T E 0.70
I E 0.55
T E 0.40
G C 0.29
T C 0.50
S C 0.59
Q C 0.59
N C 0.62
W C 0.75
T C 0.51
P C 0.31
D C 0.12
L H 0.55
T H 0.66
N H 0.72
L H 0.75
M H 0.80
T H 0.79
R H 0.65
Q H 0.35
L H 0.05
L C 0.59
D C 0.32
P C 0.22
A C 0.12
A E 0.14
I E 0.29
F E 0.40
W E 0.50
R C 0.16
K C 0.42
E C 0.61
D C 0.71
S C 0.72
D C 0.65
A C 0.60
M C 0.54
D C 0.49
W C 0.40
N C 0.31
E H 0.14
A H 0.13
D H 0.47
A H 0.64
L H 0.75
E H 0.81
F H 0.74
G H 0.83
E H 0.88
R H 0.89
L H 0.92
S H 0.92
D H 0.94
L H 0.96
A H 0.95
K H 0.95
I H 0.87
R H 0.65
K H 0.54
V H 0.48
M H 0.42
Y H 0.36
F E 0.37
L E 0.25
I E 0.17
T E 0.09
F E 0.01
G C 0.08
E C 0.47
G C 0.64
V C 0.75
E C 0.55
P C 0.45
A C 0.23
N C 0.02
L E 0.41
K E 0.59
A E 0.69
S E 0.75
V E 0.74
V E 0.50
F E 0.26
N C 0.10
Q C 0.53
L C 0.96
END

